View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_high_30 (Length: 319)
Name: NF11470_high_30
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 4501332 - 4501639
Alignment:
| Q |
1 |
ataaacatcatccattatttcatttcaatacactacactccaattttacactgaaatcaaaataaaagccccaatttagaacatgccactgcaaaatcga |
100 |
Q |
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| T |
4501332 |
ataaacatcatccattatttcatttcaatacactacactccaattttacactgaaatcaaaataaaagccccaatttagaacatgccactgcaaaatcga |
4501431 |
T |
|
| Q |
101 |
cttaaaaagtattttaacctaatttaagcgatttcgattctctctttttctttttgatcagaaaacatggcggattcggttgagcttccgagtcgtttag |
200 |
Q |
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| T |
4501432 |
cttaaaaagtatttta-cctaatttaagcgatttcgattctctctttttctctttgatcagaaaacatggcggattcggttgagcttccgagtcgtttag |
4501530 |
T |
|
| Q |
201 |
caatacttcctttcaggaacaaagttctcttacctggtgctatcattcgaattcgctgcacttcacctaccaggtagatacttcttcaattcaattcagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4501531 |
caatacttcctttcaggaacaaagttctcttacctggtgctatcattcgaattcgctgcacttcacctaccaggtagatacttcttcaattcaattcagg |
4501630 |
T |
|
| Q |
301 |
acccctttg |
309 |
Q |
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||||||||| |
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| T |
4501631 |
acccctttg |
4501639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 40941723 - 40941615
Alignment:
| Q |
167 |
atggcggattcggttgagcttccgagtcgtttagcaatacttcctttcaggaacaaagttctcttacctggtgctatcattcgaattcgctgcacttcac |
266 |
Q |
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||||| || ||||| || ||||||||||| |||| || ||||||||||| |||||||| ||||||||||| || ||||| |||| ||||||||||| | |
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| T |
40941723 |
atggccgaatcggtggaacttccgagtcgcatagcgatccttcctttcagaaacaaagtcctcttacctggcgccatcatcagaatccgctgcacttccc |
40941624 |
T |
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| Q |
267 |
ctaccaggt |
275 |
Q |
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| T |
40941623 |
ctagcaggt |
40941615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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