View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_high_42 (Length: 252)
Name: NF11470_high_42
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 13454222 - 13453992
Alignment:
| Q |
19 |
ggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaattgacactcactg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13454222 |
ggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaattgacactcactg |
13454123 |
T |
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| Q |
119 |
atggttccaaatacagtgatggaaccagcactcatggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13454122 |
atggttccaaatacagtgatggaaccagcactcatggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacc |
13454023 |
T |
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| Q |
219 |
tcttgatgcagctgctcctctcctctgtgct |
249 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
13454022 |
tcttgatgcagctgctcctctcctttgtgct |
13453992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 13419718 - 13419510
Alignment:
| Q |
19 |
ggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaattgacactcactg |
118 |
Q |
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| T |
13419718 |
ggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaacatttacagtcacat |
13419619 |
T |
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| Q |
119 |
atggttccaaatacagtgatggaaccagcactcatggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacc |
218 |
Q |
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| T |
13419618 |
gtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacc |
13419519 |
T |
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| Q |
219 |
tcttgatgc |
227 |
Q |
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||||||||| |
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| T |
13419518 |
tcttgatgc |
13419510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 13413373 - 13413186
Alignment:
| Q |
19 |
ggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaattgacactcactg |
118 |
Q |
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||||||| ||||||||| || | |||| ||||||| |||| ||||| ||| ||||| ||| ||||||||||||||||| ||| |||| | |||| |
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| T |
13413373 |
ggagacaaagtaggtgttggctacttgattgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacat |
13413274 |
T |
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| Q |
119 |
atggttccaaatacagtgatggaaccagcactcatggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattcc |
206 |
Q |
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| T |
13413273 |
gtggtgccaagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcc |
13413186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 13389029 - 13389259
Alignment:
| Q |
19 |
ggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaattgacactcactg |
118 |
Q |
| |
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||||||| ||||||||| || | | |||||||||| |||| |||||||||||||||||||| |||||||| |||||||||||| ||| || |||| |
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| T |
13389029 |
ggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgttgacaatcttgaaaattactgtcccacatttactttcacat |
13389128 |
T |
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| Q |
119 |
atggttccaaatacagtgatggaaccagcactcatggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacc |
218 |
Q |
| |
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|||| |||| || | |||||||| ||||| ||||||| | ||||||||| ||||| | || ||| |||| ||| ||| |||||| ||| ||||| |
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| T |
13389129 |
gtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggttgcagatgagaacttcgtggttcacattcctgatggattacc |
13389228 |
T |
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| Q |
219 |
tcttgatgcagctgctcctctcctctgtgct |
249 |
Q |
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||||| || ||||| |||||||| |||||| |
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| T |
13389229 |
acttgaagctgctgcacctctcctttgtgct |
13389259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 13447136 - 13447062
Alignment:
| Q |
152 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg |
226 |
Q |
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||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
13447136 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg |
13447062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 13451139 - 13451069
Alignment:
| Q |
21 |
agacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgaga |
91 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| | |||| ||||||| |
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| T |
13451139 |
agacagagttagtgtgggatgcttcgttgattcttgtcaatcatgccaaaattgtgctaataaccttgaga |
13451069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 13393436 - 13393665
Alignment:
| Q |
19 |
ggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaattgacactcactg |
118 |
Q |
| |
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||||||| ||| |||||||||||||| |||||||| |||| |||| ||||| |||| || |||||||||||||| || || || ||| || |
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| T |
13393436 |
ggagacaaagtgggtgtgggatgcttagttgattcgtgtcgtgcatgccaaaactgtgaggaaaatcttgagaattattgccctaaacaaacaaatacat |
13393535 |
T |
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| Q |
119 |
atggttccaaatacagtgatggaaccagcactcatggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacc |
218 |
Q |
| |
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|| || |||||||||||||||||| || ||| ||||||| | |||||||||||||||| | || ||||||||| | ||| |||||| ||| ||||| |
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| T |
13393536 |
atagtgccaaatacagtgatggaagcatcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttacc |
13393635 |
T |
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| Q |
219 |
tcttgatgcagctgctcctctcctctgtgc |
248 |
Q |
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| T |
13393636 |
acttgaatctgctgctcctctcctttgtgc |
13393665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 13426609 - 13426523
Alignment:
| Q |
19 |
ggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaa |
105 |
Q |
| |
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||||||| |||||| ||||||| | |||||||||| |||| ||||| ||||||||| || |||||||||||||||| |||||| |
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| T |
13426609 |
ggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaa |
13426523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 13426462 - 13426402
Alignment:
| Q |
166 |
gactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg |
226 |
Q |
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| T |
13426462 |
gactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctcttgatg |
13426402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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