View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_high_45 (Length: 250)
Name: NF11470_high_45
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_45 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 39497961 - 39498121
Alignment:
| Q |
90 |
tatacatattcaattatttgtctcttaaataaacttaacattagtgtttgtaaaatacgtaccaagccgtctataattgttgataattcacccattccaa |
189 |
Q |
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| T |
39497961 |
tatacatattcaattatttgtctcttaaatgaacttaacattagtgtttgtaaaatacgtaccaagccgtctataattgttgataattaacccattccaa |
39498060 |
T |
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| Q |
190 |
acggttaagaggccaagtgcctcaccaatgtccacatcaagcataggagacaaccacctag |
250 |
Q |
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| T |
39498061 |
acggttaagaggccaagtgcctcaccaatgtccacatcaagcataggagacaaccacctag |
39498121 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 39497905 - 39497971
Alignment:
| Q |
3 |
gtacccatggatacccattaacatccctatgtgaatggagtcccttaactaaactatatacatattc |
69 |
Q |
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| T |
39497905 |
gtacccatgaatacccattaacatccctatgtgaatggagtcccttaactaaactatatacatattc |
39497971 |
T |
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