View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_high_46 (Length: 249)

Name: NF11470_high_46
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_high_46
NF11470_high_46
[»] chr3 (3 HSPs)
chr3 (1-238)||(48710115-48710352)
chr3 (169-213)||(48706759-48706803)
chr3 (42-105)||(1810011-1810074)
[»] chr6 (2 HSPs)
chr6 (57-105)||(733165-733213)
chr6 (41-100)||(9027617-9027676)
[»] chr1 (2 HSPs)
chr1 (42-101)||(24502801-24502860)
chr1 (61-109)||(34278685-34278733)
[»] chr7 (1 HSPs)
chr7 (72-105)||(4001743-4001776)
[»] chr8 (1 HSPs)
chr8 (57-101)||(25869254-25869298)
[»] chr4 (1 HSPs)
chr4 (61-109)||(46201378-46201426)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 48710352 - 48710115
Alignment:
Q  1 cttatttgaactatctattaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48710352 cttatttgaactatctattaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatattt 48710253  T
Q  101 ctataggctttcgaaaatagtttatagcttatatnnnnnnncagtttgattttattttatcnnnnnnnattcaggcttaagctatcattaaatacatgcc 200  Q
    |||||||||| |||||||||||||||||||||||       ||||||||||||||||| |        ||||||||||||||||||||||||||||||||    
T  48710252 ctataggcttacgaaaatagtttatagcttatataaaaaaacagtttgattttattttttatttttttattcaggcttaagctatcattaaatacatgcc 48710153  T
Q  201 ccactatatctctacagaactacacatttacatttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48710152 ccactatatctctacagaactacacatttacatttcat 48710115  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 48706803 - 48706759
Alignment:
Q  169 attcaggcttaagctatcattaaatacatgccccactatatctct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48706803 attcaggcttaagctatcattaaatacatgccccactatatctct 48706759  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 1810074 - 1810011
Alignment:
Q  42 tttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttctata 105  Q
    ||||||| |||||||||||| ||||||| ||||||| ||  ||||||||| || ||||||||||    
T  1810074 tttgagagagcttacggaaacaacttatgacatgtccatgagttgttttctgcttatttctata 1810011  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 733165 - 733213
Alignment:
Q  57 ggaaataacttattacatgtcaatatgttgttttcagcatatttctata 105  Q
    ||||||||||||| ||||||| | | |||||||||||||||||||||||    
T  733165 ggaaataacttatgacatgtccacaagttgttttcagcatatttctata 733213  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 9027676 - 9027617
Alignment:
Q  41 gtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatattt 100  Q
    |||||| | |||||| ||||||||||||| ||||||| ||| |||||||||||| |||||    
T  9027676 gtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattt 9027617  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 24502801 - 24502860
Alignment:
Q  42 tttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttc 101  Q
    ||||||| ||||||| |||| ||||||| |||||||||||  ||||||||||| ||||||    
T  24502801 tttgagagagcttacagaaacaacttatgacatgtcaataatttgttttcagcttatttc 24502860  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 34278685 - 34278733
Alignment:
Q  61 ataacttattacatgtcaatatgttgttttcagcatatttctataggct 109  Q
    ||||||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  34278685 ataacttatgacatgttcataggttgttttcagcttatttctataggct 34278733  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 4001776 - 4001743
Alignment:
Q  72 catgtcaatatgttgttttcagcatatttctata 105  Q
    |||||||||| |||||||||||||||||||||||    
T  4001776 catgtcaataagttgttttcagcatatttctata 4001743  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 25869254 - 25869298
Alignment:
Q  57 ggaaataacttattacatgtcaatatgttgttttcagcatatttc 101  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  25869254 ggaaataacttatgacatgtccataagttgttttcagcttatttc 25869298  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 46201426 - 46201378
Alignment:
Q  61 ataacttattacatgtcaatatgttgttttcagcatatttctataggct 109  Q
    ||||||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  46201426 ataacttatgacatgttcataggttgttttcagcttatttctataggct 46201378  T

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