View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_high_50 (Length: 240)
Name: NF11470_high_50
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_50 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 47242256 - 47242478
Alignment:
| Q |
18 |
tatatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttga |
117 |
Q |
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| T |
47242256 |
tatatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttga |
47242355 |
T |
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| Q |
118 |
catcaccagctagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaaatcctgaaatgaatcacagcaagtgcaaataa |
217 |
Q |
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| T |
47242356 |
catcaccagctagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaactcctgaaatgaatcacagcaagtgaaaataa |
47242455 |
T |
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| Q |
218 |
acataattagtccaattaacttc |
240 |
Q |
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| T |
47242456 |
acagaattagtccaattaacttc |
47242478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 47248708 - 47248877
Alignment:
| Q |
25 |
gcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgacatcacc |
124 |
Q |
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| T |
47248708 |
gcaagatagctgcacaggaattcaaactgcaaattggaattctgcaattaaaacaaacaa---acaattagtaaacacaacacaagcttttgacatcatc |
47248804 |
T |
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| Q |
125 |
agc---tagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaaatcctgaaa |
194 |
Q |
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| T |
47248805 |
aactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaa |
47248877 |
T |
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