View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11470_high_8 (Length: 577)
Name: NF11470_high_8
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Original strand, 47590752 - 47591296
Alignment:
| Q |
19 |
aatagttctaacctcaacctgctgcatagattcacaacttggaaactggcagatatcttacatgaagtggggaatttacagacaggggatagaaccatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47590752 |
aatagttctaacctcaacctgctgcatagattcacaacttggaaactggcagatatcttacatgaagtggggaatttacagacaggggatagaaccatta |
47590851 |
T |
|
| Q |
119 |
agaattatgaaacaagatcagtaaaattgaatgatcttcaacccatatatactcttgctcaatgtacgc----------------agattgcagagcctg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47590852 |
agaattatgaaacaagatcagtaaaattgaatgatcttcaacccatatacactcttgctcaatgtacgccagatctgtctgatacagattgcagagcctg |
47590951 |
T |
|
| Q |
203 |
cctgcaaaacattttccaaaatgaaattccttggagtagtttggcaagtccagagggaaaaattctatatcctagctgctatatgatgtttggattgtcc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47590952 |
cctgcaaaacattttccaaaatgaaattccttggagtagtttggcaagtccagagggaaaaattctatatcctagctgctatatgatgtttggattgtcc |
47591051 |
T |
|
| Q |
303 |
caattctacaacaacgatgatgaaccagagatgtttgggcaagttagccctcctccaacaattaaaggtgaagtttcattcaactaatattacatgactc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47591052 |
caattctacaacaacgatgatgaaccagagatgtttgggcaagttagccctcctccaacaattaaaggtgaagtttcattcaactaatattacatgactc |
47591151 |
T |
|
| Q |
403 |
aattcatctatctctcttccaaaatatcttcaagccatataaaaaatcaatgataatcaagtaatagaactcaagtggtgtctgcacttcatctaaagtt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47591152 |
aattcatctatctctcttccaaaatatcttcaagccatataaaaaatcaatgataatcaagtaatagaactcaagtggtgtctgaacttcatctaaagtt |
47591251 |
T |
|
| Q |
503 |
gaattgaatagtttggcttgtacctgagttcaattctaaggtgaa |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47591252 |
gaattgaatagtttggcttgtacctgagttcaattctaaggtgaa |
47591296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University