View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11470_low_13 (Length: 488)
Name: NF11470_low_13
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 470
Target Start/End: Original strand, 45217358 - 45217815
Alignment:
| Q |
17 |
agcaaaggagaattaattcattataacaaagacaaa----ttagtgaacagacaaaaatttaagacacaatattgaatatgacatgaatggtaaaaacac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45217358 |
agcaaaggagaattaattcattataacaaaatatcagcttttagtgaacagacaaaaatttaagacacaatattgaatatgacatgaatggtaaaaacac |
45217457 |
T |
|
| Q |
113 |
ttagagtttgagggacaaatcaagcttctgcaactcctcttgtttattcttcaaacttgtaacattataacctccaaatacattttgcacctttcttgga |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45217458 |
ttagagtttgagggacaagtcaagcttctgcaactcctcttgtttattcttcaaacttgtaacattataacctccaaatccattttgcacctttcttgga |
45217557 |
T |
|
| Q |
213 |
gaaaatttccctgatcttgtaggtatggcactagtcaaggatgatgatccatcagtttctgcctcaacatgaagattccttgatgctggttgtgaatata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45217558 |
gaaaatttccctgatcttgtaggtatggcactagtcaaggatgatgatccatcagtttctgcctcaacatgaagattccttgatgctggttgtgaatata |
45217657 |
T |
|
| Q |
313 |
taggcagcttctgccactggtttggaccacagtaacgtgacaaaccgaaaaacggtgtttgataagaaggtttttgaatcatagaagagtgcacctgaat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45217658 |
taggcagcttctgccactggtttggaccacagtaacgtgacaaaccgaaaaacggtgtttgataagaaggtttttgaatcatagaagagtgcacctgaat |
45217757 |
T |
|
| Q |
413 |
tccaagtgatgatggtgatcttttataagagccatgcaaaggtagagaagccatactt |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45217758 |
tccaagtgatgatggtgatcttttataagagccatgcaaaggtagagaagccatactt |
45217815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University