View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_low_15 (Length: 461)

Name: NF11470_low_15
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_low_15
NF11470_low_15
[»] chr8 (5 HSPs)
chr8 (163-447)||(31794475-31794758)
chr8 (12-131)||(31794363-31794483)
chr8 (12-96)||(31788578-31788663)
chr8 (138-176)||(7172968-7173006)
chr8 (138-176)||(21216125-21216163)
[»] chr4 (1 HSPs)
chr4 (12-78)||(32609953-32610019)
[»] chr3 (2 HSPs)
chr3 (138-174)||(14194611-14194647)
chr3 (138-174)||(44301618-44301654)
[»] chr7 (1 HSPs)
chr7 (138-174)||(7457451-7457487)
[»] chr6 (1 HSPs)
chr6 (138-174)||(28101381-28101417)
[»] chr1 (1 HSPs)
chr1 (138-174)||(12151232-12151268)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 163 - 447
Target Start/End: Original strand, 31794475 - 31794758
Alignment:
Q  163 catttactaaaacaatttgtttcatttcaaattgaaaaattatttatgggccggaagtgggacttgtaacttttgaaatatctctaaatacaccgaaaaa 262  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31794475 catttactaaaacaacttgtttgatttcaaattgaaaaattatttatgggccggaagtgggacttgtaacttttgaaatatctctaaatacaccgaaaa- 31794573  T
Q  263 tacaacaattatataaccttacgaagtgcaattgacatcacaattgtatttgaactgttttctcgcaaatgtaataatttctcaattggaatagtagtag 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31794574 tacaacaattatataaccttacgaagtgcaattgacatcacaattgtatttgaactgttttctcgcaaatgtaataatttctcaattggaatagtagtag 31794673  T
Q  363 cttttacaatatcatcctaacatcataattgttcaaattgaaataaatatgctagataatatatattctcatcacaatgcatgtt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31794674 cttttacaatatcatcctaacatcataattgttcaaattgaaataaatatgctagataatatatattctcatcacaatgcatgtt 31794758  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 31794363 - 31794483
Alignment:
Q  12 atgaaaccaacttcaattggtccaaaa-ctgaaccaatttgtatggaatctttagactagatactgcatacctaattcaagtcccatgtggaccaattga 110  Q
    ||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31794363 atgaaaccaacttcaattggtccaaaaactgaaccaatttctctggaatctttagactagatactgcatacctaattcaagtcccatgtggaccaattga 31794462  T
Q  111 aactcattttatcatttacta 131  Q
    |||||||||||||||||||||    
T  31794463 aactcattttatcatttacta 31794483  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 31788578 - 31788663
Alignment:
Q  12 atgaaaccaacttcaattggtccaaaa-ctgaaccaatttgtatggaatctttagactagatactgcatacctaattcaagtccca 96  Q
    ||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||    
T  31788578 atgaaaccaacttcaattggtccaaaaactgaaccaatttctcttgaatctttagactagatactgcatacctaattcaagtccca 31788663  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 7173006 - 7172968
Alignment:
Q  138 ttgatttcaatgataaaattagttccatttactaaaaca 176  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  7173006 ttgatttcaatgataaaattagtagcatttactaaaaca 7172968  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 21216125 - 21216163
Alignment:
Q  138 ttgatttcaatgataaaattagttccatttactaaaaca 176  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  21216125 ttgatttcaatggtaaaattagttgcatttactaaaaca 21216163  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 32610019 - 32609953
Alignment:
Q  12 atgaaaccaacttcaattggtccaaaactgaaccaatttgtatggaatctttagactagatactgca 78  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32610019 atgaaaccaacttcaattggtccaaaactgaaccaatttgtctggaatctttagactagatactgca 32609953  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 14194647 - 14194611
Alignment:
Q  138 ttgatttcaatgataaaattagttccatttactaaaa 174  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14194647 ttgatttcaatgataaaattagtaccatttactaaaa 14194611  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 44301654 - 44301618
Alignment:
Q  138 ttgatttcaatgataaaattagttccatttactaaaa 174  Q
    |||||||||||||||||||||||  ||||||||||||    
T  44301654 ttgatttcaatgataaaattagtatcatttactaaaa 44301618  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 7457451 - 7457487
Alignment:
Q  138 ttgatttcaatgataaaattagttccatttactaaaa 174  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  7457451 ttgatttcaatggtaaaattagttacatttactaaaa 7457487  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 28101381 - 28101417
Alignment:
Q  138 ttgatttcaatgataaaattagttccatttactaaaa 174  Q
    |||||||||||||||||||||||  ||||||||||||    
T  28101381 ttgatttcaatgataaaattagtatcatttactaaaa 28101417  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 12151268 - 12151232
Alignment:
Q  138 ttgatttcaatgataaaattagttccatttactaaaa 174  Q
    |||||||||||||||||||||||  ||||||||||||    
T  12151268 ttgatttcaatgataaaattagtatcatttactaaaa 12151232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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