View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_16 (Length: 458)
Name: NF11470_low_16
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 41200387 - 41200828
Alignment:
| Q |
1 |
aggttttctcacagtcactctctaatcttttaatctaaatcattttagtatcattgttatgcattgctgcaactcaggcatgttattgtcttaaactatg |
100 |
Q |
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| T |
41200387 |
aggttttctcacagtcactctctaatcttttaatctaaatcattttagtatcattgttatgcattgctgcaactcaggcatgttattgtcttaaactatg |
41200486 |
T |
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| Q |
101 |
atgataatttagttgtatgcttgtttttctcttactgtattttcttcagattcgtgtataaatagtttcctcaaaccttagaacttgtgttgattggcag |
200 |
Q |
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| T |
41200487 |
atgataatttagttgtatgcttgtttttctcttactgtattttcttcagattcgtgtataaatagtttcctcaaaccttagaacttgtgtttattggcag |
41200586 |
T |
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| Q |
201 |
gtcttcagaagtcaccaccaatgatatcgagaaagacgtttgagtacatatgttcacttgtcaaggacgatatgacaacaaaatccgcgcatttgacatt |
300 |
Q |
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| T |
41200587 |
gtcttcagaagtcaccaccaatgatatcgagaaagacgtttgagtacatatgttcacttgtcaaggacgatatgacaacaaaatccgcgcatttgacatt |
41200686 |
T |
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| Q |
301 |
tacaaacggaaagccaatgtctttatttgatcaagtagccgtggcactgaggagattaggatctggcgactcgcttgtcacagttggcgattcatttggg |
400 |
Q |
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| T |
41200687 |
tacaaacggaaagccaatgtctttatttgatcaagtagccgtggcactgaggagattaggatctggcgactcgcttgtcacagttggcgattcatttggg |
41200786 |
T |
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| Q |
401 |
ctaacctactcaactgtttcacaagtaacatggcgatttgtg |
442 |
Q |
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| T |
41200787 |
ctaacctactcaactgtttcacaagtaacatggcgatttgtg |
41200828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 180 - 441
Target Start/End: Original strand, 41210615 - 41210876
Alignment:
| Q |
180 |
agaacttgtgttgattggcaggtcttcagaagtcaccaccaatgatatcgagaaagacgtttgagtacatatgttcacttgtcaaggacgatatgacaac |
279 |
Q |
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| T |
41210615 |
agaactagtgttcatttgcaggtcttcagaaggcaccgccaatgatctcccgaaagacgtttgagtacatatgttcacttgtcaaggatgatattgcaaa |
41210714 |
T |
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| Q |
280 |
aaaatccgcgcatttgacatttacaaacggaaagccaatgtctttatttgatcaagtagccgtggcactgaggagattaggatctggcgactcgcttgtc |
379 |
Q |
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| T |
41210715 |
aaaatcctctcatttctcgttttcaaacggaaagccagtgtctttaactgatcaagtggccgtggcattgagaagattaggatccggagactcgtttgtt |
41210814 |
T |
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| Q |
380 |
acagttggcgattcatttgggctaacctactcaactgtttcacaagtaacatggcgatttgt |
441 |
Q |
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| T |
41210815 |
acaattggtgattcatttggtctaagccactcaaccgtttcgcaagtaacatggcgatttgt |
41210876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 41210545 - 41210585
Alignment:
| Q |
59 |
atgcattgctgcaactcaggcatgttattgtcttaaactat |
99 |
Q |
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| T |
41210545 |
atgcattgctgcaactcaggcatgttactgtcttaaactat |
41210585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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