View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_low_18 (Length: 449)

Name: NF11470_low_18
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_low_18
NF11470_low_18
[»] chr5 (12 HSPs)
chr5 (11-265)||(18934079-18934333)
chr5 (11-265)||(4560235-4560489)
chr5 (11-262)||(18883410-18883661)
chr5 (75-234)||(42131343-42131502)
chr5 (90-262)||(34080736-34080908)
chr5 (80-259)||(22540242-22540421)
chr5 (81-262)||(18259128-18259309)
chr5 (81-137)||(239963-240019)
chr5 (81-137)||(14024994-14025050)
chr5 (38-156)||(32786038-32786156)
chr5 (81-137)||(32386547-32386603)
chr5 (113-156)||(1189121-1189164)
[»] chr3 (9 HSPs)
chr3 (11-265)||(54812167-54812421)
chr3 (11-265)||(46428582-46428836)
chr3 (11-265)||(42794512-42794766)
chr3 (11-259)||(43912171-43912419)
chr3 (80-262)||(27156155-27156337)
chr3 (80-262)||(54346764-54346946)
chr3 (81-137)||(37503148-37503204)
chr3 (81-136)||(25905871-25905926)
chr3 (80-150)||(43813088-43813158)
[»] chr2 (12 HSPs)
chr2 (11-265)||(17290055-17290309)
chr2 (41-262)||(13186917-13187138)
chr2 (9-154)||(26381183-26381328)
chr2 (80-262)||(7305068-7305250)
chr2 (80-217)||(6598993-6599130)
chr2 (80-246)||(37307282-37307448)
chr2 (80-192)||(40426155-40426267)
chr2 (81-136)||(40615032-40615087)
chr2 (81-135)||(11995725-11995779)
chr2 (87-155)||(6372673-6372741)
chr2 (81-137)||(42865976-42866032)
chr2 (88-148)||(24467731-24467791)
[»] chr1 (16 HSPs)
chr1 (11-265)||(22065120-22065374)
chr1 (262-445)||(37926595-37926790)
chr1 (41-262)||(23949727-23949948)
chr1 (31-262)||(2601212-2601442)
chr1 (80-262)||(5308671-5308853)
chr1 (80-241)||(42677241-42677402)
chr1 (80-262)||(50952555-50952737)
chr1 (63-262)||(23084881-23085080)
chr1 (80-154)||(8059849-8059923)
chr1 (90-262)||(34553870-34554042)
chr1 (11-76)||(11531450-11531515)
chr1 (81-137)||(16855004-16855060)
chr1 (81-136)||(6294076-6294131)
chr1 (11-133)||(12673188-12673310)
chr1 (81-136)||(39476120-39476175)
chr1 (81-137)||(28706051-28706107)
[»] chr8 (11 HSPs)
chr8 (11-263)||(44145732-44145984)
chr8 (11-262)||(38560537-38560788)
chr8 (80-262)||(1636027-1636209)
chr8 (80-262)||(26616714-26616894)
chr8 (80-262)||(456348-456530)
chr8 (31-151)||(9031535-9031655)
chr8 (87-147)||(1362962-1363022)
chr8 (81-137)||(42000334-42000390)
chr8 (81-137)||(45093500-45093556)
chr8 (91-137)||(35808261-35808307)
chr8 (81-137)||(33373257-33373313)
[»] chr7 (9 HSPs)
chr7 (11-265)||(24473474-24473728)
chr7 (11-196)||(24468595-24468780)
chr7 (63-262)||(48618963-48619162)
chr7 (90-262)||(8019742-8019914)
chr7 (81-137)||(8035770-8035826)
chr7 (80-262)||(29213716-29213899)
chr7 (81-137)||(5350053-5350109)
chr7 (81-137)||(38110666-38110722)
chr7 (81-136)||(46045967-46046022)
[»] chr4 (10 HSPs)
chr4 (14-265)||(47597512-47597763)
chr4 (11-171)||(4228291-4228451)
chr4 (40-258)||(43270741-43270956)
chr4 (82-262)||(34389795-34389975)
chr4 (82-262)||(36894406-36894586)
chr4 (81-137)||(44307583-44307639)
chr4 (81-137)||(1217218-1217274)
chr4 (81-137)||(1369493-1369549)
chr4 (87-155)||(11896048-11896116)
chr4 (81-137)||(28945360-28945416)
[»] chr6 (2 HSPs)
chr6 (11-265)||(1222899-1223135)
chr6 (34-136)||(6262249-6262351)
[»] scaffold0003 (1 HSPs)
scaffold0003 (40-247)||(355948-356155)
[»] scaffold0736 (1 HSPs)
scaffold0736 (87-156)||(6520-6589)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 18934333 - 18934079
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934333 atcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 18934234  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18934233 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaa 18934134  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18934133 acttgaactcgtcagaaatcatgtcgatcaatatcttcgggtcactttccacaat 18934079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 4560235 - 4560489
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  4560235 atcatcaaacatgagctttcgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagtcaatcagca 4560334  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  4560335 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaa 4560434  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  4560435 acttgaacttttcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 4560489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 18883661 - 18883410
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  18883661 atcatcaaacatgagcttttgaagctcagtaggaggagtctccaaaataatcaaattcaaattattcacaaaaatgctaaaattagcaagccaatcggca 18883562  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
      |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||    
T  18883561 tatctatttccttcgcgccaagtatggttgatttgcacatgtcaatccattctcagtagcttcctgatacaatgaactaaaatagggatattcccattaa 18883462  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    |||| |||| ||| ||||||||||||||||||||||| |||||| |||||||    
T  18883461 acttaaacttgtccgaaatcatgtcgatcaatatctttgagtcattttccac 18883410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 42131502 - 42131343
Alignment:
Q  75 ttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 174  Q
    |||||||||||| |||||| |||||| |||||| |||||||||||||||  | | ||| |||  |||||||||||||||||| |||| | |  |||||||    
T  42131502 ttcacagaaatgttaaaatgagcaagtcaatcgacacttctatttcctttccactaagcatgactgatttgcacatgccaattcatttttaatagcttcc 42131403  T
Q  175 tgatacgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgt 234  Q
    | |||| ||||||||||||||  | ||| |||||||||  |||||  |||||||||||||    
T  42131402 taatacaatgaactaaaatagagatatttccattaaaccggaacttctcagaaatcatgt 42131343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 34080736 - 34080908
Alignment:
Q  90 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaacta 189  Q
    |||||||||||||||||  ||||  | ||||||||||||||||||||||||| ||| |||| |||| ||||  |||||||||||  ||| || |||||||    
T  34080736 aaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagttgaacattccaacccatcttcagcagcttctggatccggtgaacta 34080835  T
Q  190 aaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    ||| | | | |||| |||| |||||||| |  ||||||||||| || ||||| |||||  | |||||||||||    
T  34080836 aaacaagaatattcgcattgaacttgaatttatcagaaatcatatccatcaaaatctttaaatcactttccac 34080908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 259
Target Start/End: Complemental strand, 22540421 - 22540242
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||| || |||||  |||| |||||||||| ||||||||||||||||| ||| |||| ||||  |||  |||||||||||| |||     
T  22540421 agaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccggatc 22540322  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttc 259  Q
    |  | |||||||| ||| | ||| ||||  |||||||| |  |||||||||| ||||||||| ||||| || ||||||||    
T  22540321 cagtaaactaaaacaggaatatttccatcgaacttgaaattatcagaaatcacgtcgatcaaaatctttgaatcactttc 22540242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 18259128 - 18259309
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatac 180  Q
    |||||||| |||||||| |||||||| |||||  |||||||||| ||||| |||||||||| ||| ||||  |||   ||  |||||||||||| ||| |    
T  18259128 gaaatgcttaaattagcgagccaatcagcactcatatttccttcgcgccaggtatggttgagttgaacatttcaacttatcttcagcagcttccggatcc 18259227  T
Q  181 gatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    | | |||||||| | | | ||||||||| || ||| | |  |||||||||||||||||||| ||||| || |||||||||||    
T  18259228 ggtaaactaaaacaagaatattcccattgaatttggaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 18259309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 239963 - 240019
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  239963 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 240019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 14025050 - 14024994
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  14025050 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 14024994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 32786156 - 32786038
Alignment:
Q  38 agtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    ||||| ||||||||| |||| || ||| |||||||||| |  |  |||| |||  || |||| ||||||  ||||| ||||||||||||  ||||||||     
T  32786156 agtagaaggagtctctaaaacaagcaagttcaaatgatccttaacaatgttaatgtttgcaaaccaatcaacacttttatttccttcacaacaagtatga 32786057  T
Q  138 ttgatttgcacatgccaat 156  Q
    |||||||||||||||||||    
T  32786056 ttgatttgcacatgccaat 32786038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 32386603 - 32386547
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||| ||||| |||||| | || ||||||||||||||||||    
T  32386603 gaaatgctgaaattagcaagtcaatcagcacttatgttgccttcacgccaagtatgg 32386547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 1189164 - 1189121
Alignment:
Q  113 tctatttccttcacgccaagtatggttgatttgcacatgccaat 156  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||    
T  1189164 tctattgccttcacgtcaagtatggttaatttgcacatgccaat 1189121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 54812167 - 54812421
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812167 atcatcaaacatgagctttcgaagctcaataggaggagtctccgaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 54812266  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54812267 cttctatttccttcacgccaagtatggttgatttgcacatgctaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaa 54812366  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812367 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 54812421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 46428836 - 46428582
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46428836 atcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacataaatgctaaaattagcaagccaatcggca 46428737  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  46428736 cttctatttccttcatgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaa 46428637  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46428636 acttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 46428582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 42794766 - 42794512
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||    
T  42794766 atcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacatatattctaaaattagcaagccaatcggca 42794667  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  42794666 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaa 42794567  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  42794566 acttgaacttgttagaaatcatgtcgatcaatatcttcgagtcactttccacaat 42794512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 43912171 - 43912419
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||| |||| ||  ||||||||||||  ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||  |||   ||    
T  43912171 atcatcaaacgtgaggttttgaagctcagtagctggagtctccaaaacaaccaaattcaaatgattcacagaaatgttaaaattagcaaggtaatataca 43912270  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    ||| ||||| |||| |||||  |||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||  | |||||||||||    
T  43912271 cttatattttcttcgcgccagatatggttgatttgcacttgccaatccattttcaacagcttcctgatacgatgagctaaaatagagatattcccattaa 43912370  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttc 259  Q
    |||||||||  ||||||||||||| |||||||||||| |||||||||||    
T  43912371 acttgaacttctcagaaatcatgttgatcaatatctttgagtcactttc 43912419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 27156155 - 27156337
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||  |||  |||||||||||| |||     
T  27156155 agaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccggatc 27156254  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    || | |||||||| ||| | |||||||||||||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  27156255 cggtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 27156337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 54346946 - 54346764
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  54346946 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 54346847  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    || | |||||||| ||| | ||| ||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  54346846 cggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 54346764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 37503204 - 37503148
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||||    
T  37503204 gaaatgctaaaattagcaagtcaatctgcacttctgttgccttcacgtcaagtatgg 37503148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 25905926 - 25905871
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 136  Q
    |||||||| ||||||||||| ||||| |||||||| || ||||||| |||||||||    
T  25905926 gaaatgctgaaattagcaagtcaatctgcacttctgttgccttcacaccaagtatg 25905871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 43813158 - 43813088
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacat 150  Q
    ||||||||| || ||||| || ||||| ||||| | |||||||||||||||| ||||||||| ||| ||||    
T  43813158 agaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacat 43813088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 17290309 - 17290055
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17290309 atcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatactaaaattagcaagccaatcggca 17290210  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17290209 cttctatttccttcacgccaaatatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaa 17290110  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17290109 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 17290055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 13187138 - 13186917
Alignment:
Q  41 aggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttg 140  Q
    |||||||| |||||| | ||| ||||| |||||||    ||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||| |||    
T  13187138 aggaggagactccaacacaataaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgattg 13187039  T
Q  141 atttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatca 240  Q
    | ||| |||| ||||  | |  |||||||||||| |||||| | |||||||| ||| | ||| ||||| |||||||| |  |||||||||||||||||||    
T  13187038 agttgaacattccaactcgtcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatca 13186939  T
Q  241 atatcttcgagtcactttccac 262  Q
    | ||||| || |||||||||||    
T  13186938 aaatctttgaatcactttccac 13186917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 26381183 - 26381328
Alignment:
Q  9 acatcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcgg 108  Q
    ||||||||||| | ||||||  |||| ||| |||||||||||||||||| || |||||||||||||| |  || |||||| |  ||||||||||||||      
T  26381183 acatcatcaaataggagcttttgaagttcactaggaggagtctccaaaacaaacaaattcaaatgatccttagtaatgctgatgttagcaagccaatcaa 26381282  T
Q  109 cacttctatttccttcacgccaagtatggttgatttgcacatgcca 154  Q
     |||| |||||||||||| | |||||||||||||||||||||||||    
T  26381283 aacttttatttccttcacacgaagtatggttgatttgcacatgcca 26381328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 7305068 - 7305250
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||| ||| | || ||||  |||  ||||||| |||| |||     
T  7305068 agaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggttgagttgaaaattccaactcatcttcagcaggttccggatc 7305167  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    || | || ||||| ||| | |||| |||| |||||||| |  | |||||||||||||||||| ||||| || |||||||||||    
T  7305168 cggtaaagtaaaacaggaatattctcattgaacttgaaattattagaaatcatgtcgatcaaaatctttgaatcactttccac 7305250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 6599130 - 6598993
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||| |||||||| |||||  ||||||||||||||||| ||||||||| ||| |||| ||||| |||  |||||| ||||| |||     
T  6599130 agaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaattatggttgagttgaacattccaattcatcttcagcaacttccggatc 6599031  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaa 217  Q
    || |||||||||| ||| | ||||||||| ||||||||    
T  6599030 cggtgaactaaaacaggaatattcccattgaacttgaa 6598993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 246
Target Start/End: Original strand, 37307282 - 37307448
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| || ||| | |||||||| ||||| |||||||||||||| ||||||||||||| ||| ||||  |||  |||  || ||| ||| | |||     
T  37307282 agaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagttgaacatttcaactcatcttcggcaactttcagatc 37307381  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatct 246  Q
    || | |||||||| ||| | |||| |||| |||||||| |  |||||||||||||||||||| ||||    
T  37307382 cggtaaactaaaacaggaatattctcattgaacttgaaattatcagaaatcatgtcgatcaaaatct 37307448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 40426155 - 40426267
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||| || ||||| ||||| ||||||||||||| |||| ||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  40426155 agaaatgcttaaattagcgagtcaatcagcactcctatttccttcacaccaaatatgggtgagttgaacattccaactcatcttcagcagcttccggata 40426254  T
Q  180 cgatgaactaaaa 192  Q
    || | ||||||||    
T  40426255 cggtaaactaaaa 40426267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 40615032 - 40615087
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 136  Q
    |||||||| |||||||||| |||||| |||||||| || |||||||||||||||||    
T  40615032 gaaatgctgaaattagcaaaccaatctgcacttctgttaccttcacgccaagtatg 40615087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 11995725 - 11995779
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtat 135  Q
    |||||||| ||||||||||| ||||| |||||||| || ||||||||||||||||    
T  11995725 gaaatgctgaaattagcaagacaatctgcacttctgttgccttcacgccaagtat 11995779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 6372741 - 6372673
Alignment:
Q  87 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 155  Q
    ||||||||||| |||||||| ||   | | ||||||||||||||||||||||||||||| || ||||||    
T  6372741 ctaaaattagctagccaatcagccgatttgtttccttcacgccaagtatggttgatttgaacttgccaa 6372673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 42866032 - 42865976
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||| | || ||||| ||||||||||||    
T  42866032 gaaatgctgaaattagcaagccaatctgcacttttgttgccttcccgccaagtatgg 42865976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 24467791 - 24467731
Alignment:
Q  88 taaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcac 148  Q
    ||||||||| |||||||||  ||||||||||||| || || ||| ||||||||| ||||||    
T  24467791 taaaattaggaagccaatcaacacttctatttccctcccgtcaaatatggttgaattgcac 24467731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 22065120 - 22065374
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22065120 atcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagatatgctaaaattagcaagccaatcggca 22065219  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  22065220 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcctcctgatacgatgaactaaaataggcacattcccattaa 22065319  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22065320 acttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 22065374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 262 - 445
Target Start/End: Complemental strand, 37926790 - 37926595
Alignment:
Q  262 caattgaaatcaataattcaatcttaaaatcaatgcatccaaattgaaagaaaaaatagaactgttttaaatagtttattt------------catattg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||    
T  37926790 caattgaaatcaataattcaatcttaaaatcaatgcatccaaattgaaagaaaaaatagaactgttttaaatagtttatttagcagtcaatgtcatattg 37926691  T
Q  350 acaatattcctggcagtggcctaataatttagaccaaatataaatcatgttctctctctatgctaactatttatgcaggcaattgtctgtgctcct 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37926690 acaatattcctggcagtggcctaataatttagaccaaatataaatcatgttctctctctatgctaactatttatgcaggcaattgtgtgtgctcct 37926595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 23949948 - 23949727
Alignment:
Q  41 aggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttg 140  Q
    |||||||| |||||| | ||| ||||| |||||||    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  23949948 aggaggagactccaacacaataaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttg 23949849  T
Q  141 atttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatca 240  Q
    | ||| |||| | ||  |||  |||||||||||| |||||| | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||||||||    
T  23949848 agttgaacattctaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatca 23949749  T
Q  241 atatcttcgagtcactttccac 262  Q
    | ||||| || |||||||||||    
T  23949748 aaatctttgaatcactttccac 23949727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 2601442 - 2601212
Alignment:
Q  31 gaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 130  Q
    |||||||| ||| |||| || |||||| ||||||||||||||||| |||| |||||||| | |||||||||||||  |||||| |||||  ||   ||||    
T  2601442 gaagctcactagaaggattccccaaaacaatcaaattcaaatgatccacaaaaatgctatagttagcaagccaataagcacttatattttgtttgtgcca 2601343  T
Q  131 agtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatc 230  Q
    || ||| ||||||||||||| ||||| |||  ||||||||||| |||||   ||||||||||||| || |||| ||||||||||||| | ||||||| ||    
T  2601342 agaatgattgatttgcacatcccaattcatgttcagcagcttcatgatatagtgaactaaaatagttatattctcattaaacttgaatttgtcagaattc 2601243  T
Q  231 atgtcgatcaatatcttcgagtcactttccac 262  Q
    |||||||| |||||||| || |||||||||||    
T  2601242 atgtcgat-aatatcttagaatcactttccac 2601212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 5308853 - 5308671
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||  |||  ||||||| |||| ||||    
T  5308853 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagattccggata 5308754  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    || | |||||||| ||| | ||| ||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  5308753 cggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgattcactttccac 5308671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 80 - 241
Target Start/End: Complemental strand, 42677402 - 42677241
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||  |||  |||||||||||| ||||    
T  42677402 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccggata 42677303  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaa 241  Q
    || | |||||||| ||| | ||| ||||| |||||||| |  ||||||||||||||||||||    
T  42677302 cggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaa 42677241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 50952555 - 50952737
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| | |||||| |||||||| ||||| |||||| ||||||||||||||||||||| ||| |||| ||||  |||  |||||||||||| |||     
T  50952555 agaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccggatc 50952654  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    || | |||||||| | | | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  50952655 cggtaaactaaaacatgaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 50952737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 262
Target Start/End: Original strand, 23084881 - 23085080
Alignment:
Q  63 aaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattc 162  Q
    ||||| ||||||| |  ||||||||| |||||||| |||||||| ||||| |||||||||||||||||| ||||||||| ||| |||| ||||  |||      
T  23084881 aaattaaaatgatacgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatggttgagttgaacattccaactcatct 23084980  T
Q  163 tcagcagcttcctgatacgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    |||||||||||| ||| || | |||||||| | | | ||||||||| |||||||| |  ||| |||||||||||||||| |||||  | |||||||||||    
T  23084981 tcagcagcttccggatccggtaaactaaaacatgaatattcccattgaacttgaaattatcaaaaatcatgtcgatcaaaatctttaaatcactttccac 23085080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 8059849 - 8059923
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgcca 154  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || ||||| |||||||||| |||||| |||||    
T  8059849 agaaaagctaaaattagcaagccaatcagcacttctatttccctcgcgccaggtatggttgaattgcacctgcca 8059923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 34553870 - 34554042
Alignment:
Q  90 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaacta 189  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||||||||| ||| |||| | ||  |||  |||||| ||||  ||| |  |||||||    
T  34553870 aaattagcgagtcaatcagcacttctatttccttcacaccaagtatggttgagttgaacattctaactcatcttcagcatcttctggatccagtgaacta 34553969  T
Q  190 aaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    ||||||  | |||||||| ||| |  || |  ||||||||||||||||| || ||||| || |||||||||||    
T  34553970 aaatagaaatattcccatcaaattcaaaattatcagaaatcatgtcgataaaaatctttgaatcactttccac 34554042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 11531515 - 11531450
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgatt 76  Q
    ||||||||||||||||||   |||||  ||||||| ||||||||||||||||||||||||||||||    
T  11531515 atcatcaaacatgagcttttaaagctgggtaggagaagtctccaaaataatcaaattcaaatgatt 11531450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 16855060 - 16855004
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  16855060 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 16855004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 6294131 - 6294076
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 136  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||    
T  6294131 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatg 6294076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 12673188 - 12673310
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||  |  |||||||| ||||||||  ||||||||  |||| |||| ||  ||||| ||| | ||||||||| || |||||||| |||    
T  12673188 atcatcaaacatgaggctttgaagctcattaggaggatactccaaaactatcagattccaagaattcaaagataagctaaaattggctagccaatcagca 12673287  T
Q  111 cttctatttccttcacgccaagt 133  Q
    | | |||| ||||||||||||||    
T  12673288 catatattgccttcacgccaagt 12673310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 39476175 - 39476120
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 136  Q
    |||||||| ||||||||||| ||||| |||||| | || |||||||||||||||||    
T  39476175 gaaatgctgaaattagcaagacaatctgcacttttgttgccttcacgccaagtatg 39476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 28706107 - 28706051
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||   ||||| | || ||||||||||||||||||    
T  28706107 gaaatgctgaaattagcaagccaatatacacttttgttgccttcacgccaagtatgg 28706051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 44145984 - 44145732
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  44145984 atcatcaaccatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagtcaatcagca 44145885  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44145884 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaa 44145785  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccaca 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145784 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccaca 44145732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 38560537 - 38560788
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    ||||||||||||||||||  |||||||||| |  | ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38560537 atcatcaaacatgagcttttgaagctcagtggatgaagtcttcaaaacaatcaaattcaaatgattcacaaaaatgctaaaattagcaagccaatcggca 38560636  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||    
T  38560637 cttctatttccttcgtgccaagtatggttgatttgcacatgccaatccattctcagcagcttcttgatacgatgaactaaaatagggatattcccattaa 38560736  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    | ||||||   |||||||||| ||||||||||||||||||| ||||||||||    
T  38560737 atttgaacctatcagaaatcacgtcgatcaatatcttcgagccactttccac 38560788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 1636209 - 1636027
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||| | |||||||| |||||||| ||||| ||||||||||||||| |||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  1636209 agaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 1636110  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  1636109 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 1636027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 26616714 - 26616894
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||||| |||||||  |||||||| | |||  ||||||||||||||||||||||||||| ||| |||| ||||  |||  |||||||||||| |||     
T  26616714 agaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccagatc 26616813  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    || | ||||  || ||| | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  26616814 cggtaaact--aacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 26616894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 456348 - 456530
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 179  Q
    ||||||| | |||||||| |||||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||  |||| ||||||| |||     
T  456348 agaaatgtttaaattagcgagccaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcatcttcagtagcttccggatc 456447  T
Q  180 cgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    || |||| ||||| ||| | ||||||||| |||||||| |  ||||||||||| || |||||  |||| || |||||||||||    
T  456448 cggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatatcaatcaaactctttgaatcactttccac 456530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 9031535 - 9031655
Alignment:
Q  31 gaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 130  Q
    |||||||| ||||| |||||||||||| || |||||||||||||| |  |  ||||||||  || |||||||||||  |||||||||||||||||||  |    
T  9031535 gaagctcactaggaagagtctccaaaaaaagcaaattcaaatgatccttaataatgctaatgtttgcaagccaatcaacacttctatttccttcacgtta 9031634  T
Q  131 agtatggttgatttgcacatg 151  Q
    ||||||||| |||| ||||||    
T  9031635 agtatggttaattttcacatg 9031655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 1363022 - 1362962
Alignment:
Q  87 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgca 147  Q
    |||||||||||||||||||| |||||||||||||| ||  |||| |||||||||| |||||    
T  1363022 ctaaaattagcaagccaatcagcacttctatttccctcctgccaggtatggttgaattgca 1362962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 42000390 - 42000334
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||| | || ||||||||||||||||||    
T  42000390 gaaatgctgaaattagcaagccaatctgcacttttgttgccttcacgccaagtatgg 42000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 45093556 - 45093500
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||    
T  45093556 gaaatgctgaaatttgcaagccaatctgcacttctgttgccttcacgccaagtatgg 45093500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 35808307 - 35808261
Alignment:
Q  91 aattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||||||||||| |||||||| || ||||||||||||||||||    
T  35808307 aattagcaagccaatctgcacttctgttgccttcacgccaagtatgg 35808261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 33373313 - 33373257
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| |||||||||| |||||| |||||| | || ||||| ||||||||||||    
T  33373313 gaaatgctgaaattagcaatccaatctgcacttttgttgccttcccgccaagtatgg 33373257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 24473728 - 24473474
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24473728 atcatcaaacatgagctttcgaagctgagtaggaggagtttcgaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 24473629  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24473628 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaa 24473529  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24473528 acttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 24473474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 24468780 - 24468595
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24468780 atcatcaaacatgagctttcgaagctgagtaggaggagtttcgaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 24468681  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaatagg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24468680 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaatagg 24468595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 63 - 262
Target Start/End: Complemental strand, 48619162 - 48618963
Alignment:
Q  63 aaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattc 162  Q
    ||||| ||||||||   ||||||||| |||||||| |||||||| |||||  ||||||||||||||||||||||||||| ||| |||| ||||  |||      
T  48619162 aaattaaaatgatttgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatggttgagttgaacattccaactcatct 48619063  T
Q  163 tcagcagcttcctgatacgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    |||||||||||| |||||  | |||||||| ||| | |||||||||||||||||| |  |||||||||||||| ||||| ||||| || |||||||||||    
T  48619062 tcagcagcttccggatacagtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcaatcaaaatctttgaatcactttccac 48618963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 8019742 - 8019914
Alignment:
Q  90 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaacta 189  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  ||||||| |||| |||||| | |||||    
T  8019742 aaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagattccggatacggtaaacta 8019841  T
Q  190 aaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
    ||| ||| | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  8019842 aaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 8019914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 8035826 - 8035770
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||    
T  8035826 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaagtatgg 8035770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 29213716 - 29213899
Alignment:
Q  80 agaaatgctaaaattagcaagccaatcggcacttctatttcctt-cacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgat 178  Q
    ||||||||| |||||||| || |||||  |||| || ||| ||| |||||||||||||||||| ||| |||| ||||  |||  |||  ||||||  |||    
T  29213716 agaaatgcttaaattagcgagtcaatcaacactccttttttctttcacgccaagtatggttgagttgaacattccaactcatcttcaatagcttctggat 29213815  T
Q  179 acgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
     || |||| ||||| ||  | ||| ||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  29213816 ccggtgaagtaaaacagaaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 29213899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 5350109 - 5350053
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||| | || ||||||||||||||||||    
T  5350109 gaaatgctgaaattagcaagccaatctgcacttttgttgccttcacgccaagtatgg 5350053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 38110666 - 38110722
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  38110666 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 38110722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 46046022 - 46045967
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 136  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||    
T  46046022 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatg 46045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 47597512 - 47597763
Alignment:
Q  14 atcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcactt 113  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47597512 atcaaacatcagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacaaaaatgctaaaattagcaagccaatcggcactt 47597611  T
Q  114 ctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaaact 213  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  47597612 ctatttcctttatgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacaatgaactaaaataggcatattcccattaaact 47597711  T
Q  214 tgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47597712 tgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 47597763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 4228451 - 4228291
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4228451 atcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaataattcacagaaatgctaaaattagcaagccaatcggca 4228352  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagct 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4228351 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagct 4228291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 43270741 - 43270956
Alignment:
Q  40 taggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggtt 139  Q
    |||||||||||||||||| | ||||||| |||| || |||| ||||| |||| |||||||| || ||  ||||| ||||| ||||||| ||| |||||||    
T  43270741 taggaggagtctccaaaacagtcaaattaaaattatccacaaaaatgttaaagttagcaagtca-tc--cacttatattttcttcacgtcaaatatggtt 43270837  T
Q  140 gatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatc 239  Q
    |||||||| |||| |||  ||| | |  |||||| |||||||||||||||||||||| | ||| ||||||| |||||| | |||| ||||||||||||||    
T  43270838 gatttgcaaatgctaattaatttttaatagcttcttgatacgatgaactaaaatagggatatttccattaagcttgaaattgtcaaaaatcatgtcgatc 43270937  T
Q  240 aatatcttcgagtcacttt 258  Q
    |||||||| ||||||||||    
T  43270938 aatatcttagagtcacttt 43270956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 82 - 262
Target Start/End: Original strand, 34389795 - 34389975
Alignment:
Q  82 aaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacg 181  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||||||||| ||| |||| ||||  |||  |||||||||| | ||| ||    
T  34389795 aaatgcttaaattagcgagccaatcagcactcctatttccttcacgctaagtatggttgagttgaacattccaaatcatcttcagcagctttcggatccg 34389894  T
Q  182 atgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
     | |||||||| | | | ||||||||| |||||||| |  |||||||||||||||||||| ||||| || |||||||||||    
T  34389895 gtaaactaaaacaagaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 34389975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 262
Target Start/End: Original strand, 36894406 - 36894586
Alignment:
Q  82 aaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacg 181  Q
    ||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||||||| ||| |||| ||||  |||  |||||| ||||| ||| ||    
T  36894406 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcaacttccggatccg 36894505  T
Q  182 atgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 262  Q
     | |||||||| ||| | |||| |||| |||||||| |  | |||||||||||||||||| ||||| || |||||||||||    
T  36894506 gtaaactaaaacaggaatattcacattgaacttgaaattattagaaatcatgtcgatcaaaatctttgaatcactttccac 36894586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 44307639 - 44307583
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||    
T  44307639 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaagtatgg 44307583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 1217274 - 1217218
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  1217274 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 1217218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 1369549 - 1369493
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  1369549 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 1369493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 11896048 - 11896116
Alignment:
Q  87 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 155  Q
    ||||||||||| |||||||| ||   |||||||||||||||||| ||||||||||| || |||||||||    
T  11896048 ctaaaattagctagccaatctgctgatctatttccttcacgccatgtatggttgatatgaacatgccaa 11896116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 28945360 - 28945416
Alignment:
Q  81 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 137  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  28945360 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 28945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 1222899 - 1223135
Alignment:
Q  11 atcatcaaacatgagcttacgaagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 110  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1222899 atcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 1222998  T
Q  111 cttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaa 210  Q
    ||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1222999 cttctatttccttcacgcca------------------atgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaa 1223080  T
Q  211 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223081 acttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaat 1223135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 6262351 - 6262249
Alignment:
Q  34 gctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagt 133  Q
    ||||| |||||||  ||| ||||| ||  |||||| ||| |||||||| || ||| |||||| |||| ||||| ||||||||||| ||||| || |||||    
T  6262351 gctcactaggagggttcttcaaaacaacaaaattccaataattcacagtaaggctgaaattaacaagtcaatcagcacttctattgccttctcgtcaagt 6262252  T
Q  134 atg 136  Q
    |||    
T  6262251 atg 6262249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 356155 - 355948
Alignment:
Q  40 taggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggtt 139  Q
    |||||||| ||||||||| |||||||||||| |||| || | ||| |||||| ||||||||  |||| |||||| ||||| ||||  | ||| ||| |||    
T  356155 taggaggactctccaaaacaatcaaattcaattgatccataaaaacgctaaagttagcaagttaatcagcacttgtattttcttcgggtcaaatatagtt 356056  T
Q  140 gatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggtacattcccattaaacttgaactcgtcagaaatcatgtcgatc 239  Q
    ||||||||||||  ||| |||| |||||| |||||| ||| |||||||||||||||| | ||||| |||||||||||| | || | |||| |||||||||    
T  356055 gatttgcacatgttaattcattttcagcaacttcctaatatgatgaactaaaatagggatattcctattaaacttgaaattgtgacaaataatgtcgatc 355956  T
Q  240 aatatctt 247  Q
    ||||||||    
T  355955 aatatctt 355948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0736 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0736
Description:

Target: scaffold0736; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 6589 - 6520
Alignment:
Q  87 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaat 156  Q
    ||||| ||||| | |||||||||   |||||| |||||||||||||||||||| ||||  ||||||||||    
T  6589 ctaaagttagctaaccaatcggctgctctattgccttcacgccaagtatggttaatttaaacatgccaat 6520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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