View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_19 (Length: 441)
Name: NF11470_low_19
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 37216878 - 37216465
Alignment:
| Q |
13 |
agaaattcggattctacaacgttaaataaagtgttggagttatagggtgggtagctattaagccagctacgagcaccgttattaaaaaggttatgaaatg |
112 |
Q |
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| T |
37216878 |
agaaattcggattctacaacgttaaataaagtgttggagttatagggtgagtagctattaagccagctacgagcaccgttattaaaaaggttatgaaatg |
37216779 |
T |
|
| Q |
113 |
tactaaggctaaggggagactagataaataatgggtgggtgaaagcgcagaattttcggtaagaccaggataacaatgttgagaaagaggttagtgttga |
212 |
Q |
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| T |
37216778 |
tactaaggctagggggagactagataaataatgggtgggtgaaagcgcggaattttcggtaagaccaggataacaatgttgagaaagaggttagtgttga |
37216679 |
T |
|
| Q |
213 |
ttagtttactgggcattttgcgaagagtttggcaaggattctttcatgtcgtttgggacaatgcttactctcttgtccgccgaaatgacacatctctagt |
312 |
Q |
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| T |
37216678 |
ttagtttactgggcattttgcaaagagtttggcaaggattctttcatgtcgtttgggacaatgcttactctcttgtccgccgaaatgacacatccctagt |
37216579 |
T |
|
| Q |
313 |
gttggtggatggttgagttaggagtgtctgcaagatcccaatgttggaagtgcatgtattgttttttcttctgttgtgcaaaggagacttaatggggttc |
412 |
Q |
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| T |
37216578 |
gttggtagatggttgagttaggagcgtctgcaagatcccaatgttggaagtgtgtgtattgttttttcttctgctgtgcaaaggagacttaatggggttc |
37216479 |
T |
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| Q |
413 |
agtaacgatgaaag |
426 |
Q |
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| T |
37216478 |
agtaacgatgaaag |
37216465 |
T |
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