View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_low_2 (Length: 782)

Name: NF11470_low_2
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_low_2
NF11470_low_2
[»] chr3 (1 HSPs)
chr3 (11-765)||(25824837-25825591)


Alignment Details
Target: chr3 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 11 - 765
Target Start/End: Complemental strand, 25825591 - 25824837
Alignment:
Q  11 agcaaagggaagattgagagtttgcatcataagagagttggttcaacattgtcttttagagagccaccaacttttcaaatgagtgaaaatgagagctttt 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25825591 agcaatgggaagattgagagtttgcatcataagagagttggttcaacattgtcttttagagagccaccaacttttcaaatgagtgaaaatgagagctttt 25825492  T
Q  111 ttgtgcttagttttggaaatgaaggtgagagtggtaaagggttgaaatcaagtgggagaaaaaagaaaatgagttgttcagaattgaaggagaagaagaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25825491 ttgtgcttagttttggaaatgaaggtgagagtggtaaagggttgaaatcaaatgggagaaaaaagaaaatgagttgttcagaattgaaggagaagaagaa 25825392  T
Q  211 caagggagagaatgtttgtgatgagaaagtgagcaaaagggtttctaataaacttcaagaaatcaccaatacttcgcatcggtttaaggcttcttcgtct 310  Q
    |||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25825391 caagagagagattgtttgtgatgagaaaatgagcaaaagggtttctaataaacttcaagaaatcaccaatacttcgcatcggtttaaggcttcttcgtct 25825292  T
Q  311 gaaaagaagtgttttaattcagaagcaggtgaattgttgaaggcaaagaattgcaaggaagttgtagttggtgaaatgctgaagaagagaaggacgagga 410  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25825291 gaaaagaagtgttttgattcagaagcaggtgagttgttgaaggcaatgaattgcaaggaagttgtagttggtgaaaggctgaagaagagaaggacgagga 25825192  T
Q  411 agaagcgaagaaattgttatacagaacagaagatagaaactgaatgcaaatcagatgatttaagtcctgtttctgttcttgaatttgagcgcaagtcttg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25825191 agaagcgaagaaattgttatacagaacagaagatagaaactgaatgcaaatcagatgatttaagtcctgtttctgttcttgaatttgagcgcaagtcttg 25825092  T
Q  511 tgtagcaggtttgtttcttttgcgaatttgatgtgttcaacttttttctgttttctagctgcaattgatgcgtcgtgatctttcgtattaagttcatgtt 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25825091 tgtagcaggtttgtttcttttgcgaatttgatgtgttcaacttttttctgatttctagctgcaattgatgcgtcgtgatctttcgtattaagttcatgtt 25824992  T
Q  611 taaatcgactacgagtttgatgaaatcacagtgcgccgactggattttaatcatacgctacactaagtataatcatggtgtcactgcgactttgtaaaat 710  Q
    |||||| |||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  25824991 taaatcaactacgagtttgatgaaatcacagtgtgccgatcggattttaatcatacgctaaactaagtataatcatggtgtcactgcgattttgtaaaat 25824892  T
Q  711 tcagtgtcatttcaaacatgcactaagtatagtctttatcaaacgaggctgatcc 765  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  25824891 tcagtgtcatttcaaacatgcactaagcatagtctttatcaaatgaggctgatcc 25824837  T

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