View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_low_22 (Length: 412)

Name: NF11470_low_22
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_low_22
NF11470_low_22
[»] chr3 (31 HSPs)
chr3 (15-412)||(41080528-41080924)
chr3 (196-328)||(14623807-14623939)
chr3 (195-328)||(8076392-8076525)
chr3 (197-325)||(13898026-13898154)
chr3 (196-336)||(17470405-17470545)
chr3 (196-328)||(35536626-35536758)
chr3 (196-328)||(49607414-49607546)
chr3 (196-328)||(53982011-53982143)
chr3 (237-328)||(1758424-1758516)
chr3 (196-337)||(33644200-33644341)
chr3 (196-336)||(8956762-8956902)
chr3 (201-323)||(26754700-26754822)
chr3 (200-324)||(30801705-30801829)
chr3 (196-336)||(54868855-54868995)
chr3 (196-299)||(27714888-27714991)
chr3 (197-328)||(31456690-31456821)
chr3 (201-336)||(52629305-52629440)
chr3 (292-366)||(11140963-11141037)
chr3 (196-313)||(26141515-26141632)
chr3 (203-328)||(35093592-35093717)
chr3 (196-258)||(11095392-11095453)
chr3 (196-324)||(24699926-24700054)
chr3 (218-322)||(36331303-36331407)
chr3 (196-328)||(36707396-36707524)
chr3 (249-323)||(48375679-48375754)
chr3 (196-313)||(11907371-11907488)
chr3 (243-324)||(25395305-25395387)
chr3 (196-328)||(33118818-33118951)
chr3 (287-328)||(43746430-43746471)
chr3 (219-317)||(25407126-25407225)
chr3 (195-322)||(47531864-47531991)
[»] chr2 (31 HSPs)
chr2 (197-369)||(41575138-41575311)
chr2 (196-328)||(17819972-17820104)
chr2 (196-328)||(9058480-9058612)
chr2 (196-328)||(33436068-33436200)
chr2 (199-328)||(28863458-28863587)
chr2 (196-328)||(7465703-7465835)
chr2 (196-328)||(17473020-17473152)
chr2 (196-328)||(20700815-20700947)
chr2 (196-322)||(26891478-26891604)
chr2 (218-323)||(3440001-3440106)
chr2 (199-328)||(19930788-19930917)
chr2 (196-328)||(13438343-13438475)
chr2 (240-323)||(3737986-3738070)
chr2 (196-366)||(33436211-33436381)
chr2 (218-322)||(2997461-2997565)
chr2 (196-328)||(10249350-10249482)
chr2 (196-328)||(40701478-40701610)
chr2 (196-336)||(45097695-45097835)
chr2 (196-319)||(40613879-40614002)
chr2 (237-322)||(38732394-38732480)
chr2 (196-328)||(32505616-32505748)
chr2 (196-336)||(43490121-43490261)
chr2 (196-322)||(28381629-28381755)
chr2 (196-322)||(30915463-30915589)
chr2 (196-322)||(42257193-42257319)
chr2 (277-328)||(44152008-44152059)
chr2 (196-300)||(5574484-5574588)
chr2 (237-322)||(13365393-13365479)
chr2 (196-258)||(27864704-27864765)
chr2 (196-328)||(4060685-4060817)
chr2 (286-322)||(41758677-41758713)
[»] chr4 (36 HSPs)
chr4 (196-366)||(3481654-3481824)
chr4 (196-329)||(50052395-50052528)
chr4 (196-328)||(29239886-29240018)
chr4 (196-328)||(50526139-50526271)
chr4 (196-328)||(6034044-6034176)
chr4 (234-336)||(48647686-48647789)
chr4 (196-364)||(29234177-29234345)
chr4 (195-328)||(41236346-41236479)
chr4 (187-336)||(42044327-42044476)
chr4 (196-328)||(480415-480547)
chr4 (236-328)||(28480236-28480329)
chr4 (236-328)||(28481111-28481204)
chr4 (236-328)||(28481986-28482079)
chr4 (196-328)||(48183017-48183149)
chr4 (196-322)||(54473507-54473633)
chr4 (196-322)||(55475191-55475317)
chr4 (241-322)||(18769021-18769103)
chr4 (196-328)||(11511430-11511562)
chr4 (218-322)||(17983717-17983821)
chr4 (196-328)||(23608235-23608367)
chr4 (196-328)||(24995075-24995207)
chr4 (196-322)||(55079687-55079814)
chr4 (196-322)||(19670690-19670816)
chr4 (196-336)||(44536706-44536845)
chr4 (218-322)||(50813866-50813970)
chr4 (241-324)||(18769153-18769237)
chr4 (196-267)||(29547989-29548059)
chr4 (219-305)||(29977908-29977994)
chr4 (237-322)||(29589714-29589800)
chr4 (196-258)||(40574779-40574840)
chr4 (218-322)||(18924469-18924573)
chr4 (196-328)||(47104544-47104676)
chr4 (196-336)||(47986208-47986348)
chr4 (196-258)||(31910192-31910253)
chr4 (218-267)||(32766980-32767028)
chr4 (195-267)||(8343193-8343264)
[»] chr8 (29 HSPs)
chr8 (196-328)||(37038479-37038611)
chr8 (197-328)||(5957831-5957962)
chr8 (196-322)||(43414555-43414681)
chr8 (195-328)||(1179908-1180041)
chr8 (196-328)||(12831047-12831179)
chr8 (218-328)||(8841400-8841510)
chr8 (196-322)||(40423917-40424043)
chr8 (196-328)||(14547922-14548054)
chr8 (196-328)||(34012264-34012396)
chr8 (196-322)||(16383377-16383503)
chr8 (196-328)||(504089-504221)
chr8 (196-320)||(15197333-15197457)
chr8 (240-336)||(15258889-15258986)
chr8 (196-328)||(17443825-17443957)
chr8 (196-328)||(23122565-23122697)
chr8 (196-322)||(34307216-34307342)
chr8 (201-366)||(10621017-10621182)
chr8 (196-336)||(4854823-4854963)
chr8 (241-328)||(9122229-9122317)
chr8 (196-322)||(16056375-16056501)
chr8 (196-322)||(24307767-24307893)
chr8 (196-322)||(30479448-30479574)
chr8 (196-336)||(15048141-15048281)
chr8 (196-366)||(20074872-20075034)
chr8 (196-328)||(10284599-10284731)
chr8 (196-320)||(42221515-42221639)
chr8 (285-328)||(42354556-42354599)
chr8 (196-328)||(44507055-44507187)
chr8 (195-279)||(14055610-14055693)
[»] chr6 (17 HSPs)
chr6 (196-328)||(31952998-31953130)
chr6 (196-328)||(32869678-32869810)
chr6 (238-329)||(12732523-12732615)
chr6 (196-328)||(17598554-17598686)
chr6 (199-322)||(22880632-22880755)
chr6 (191-322)||(30341334-30341465)
chr6 (196-322)||(15507998-15508124)
chr6 (196-322)||(15990016-15990142)
chr6 (200-328)||(28536456-28536582)
chr6 (196-336)||(6209425-6209565)
chr6 (196-328)||(11427616-11427750)
chr6 (238-336)||(23128087-23128186)
chr6 (196-322)||(31976248-31976374)
chr6 (201-329)||(9379679-9379807)
chr6 (196-328)||(29857827-29857959)
chr6 (241-324)||(30870058-30870142)
chr6 (212-322)||(4231564-4231674)
[»] chr1 (25 HSPs)
chr1 (196-328)||(51898651-51898783)
chr1 (196-336)||(9474836-9474976)
chr1 (196-328)||(47452288-47452420)
chr1 (196-328)||(27564703-27564835)
chr1 (196-328)||(37649198-37649330)
chr1 (201-328)||(44453984-44454111)
chr1 (196-322)||(2581915-2582041)
chr1 (196-322)||(32813247-32813373)
chr1 (199-328)||(44548344-44548473)
chr1 (196-322)||(5958974-5959100)
chr1 (196-322)||(38595154-38595280)
chr1 (196-322)||(50590974-50591100)
chr1 (196-328)||(8346355-8346488)
chr1 (196-336)||(41608453-41608593)
chr1 (196-336)||(50630458-50630598)
chr1 (195-322)||(3000318-3000445)
chr1 (238-328)||(13414802-13414893)
chr1 (196-324)||(6260870-6260998)
chr1 (196-328)||(38632289-38632421)
chr1 (196-328)||(48716250-48716382)
chr1 (240-337)||(48489343-48489441)
chr1 (196-328)||(41758805-41758937)
chr1 (197-328)||(11152346-11152476)
chr1 (196-267)||(23597121-23597191)
chr1 (196-328)||(43132-43264)
[»] chr5 (24 HSPs)
chr5 (196-336)||(2740274-2740414)
chr5 (199-328)||(18520852-18520981)
chr5 (196-336)||(6679698-6679838)
chr5 (196-328)||(35943860-35943992)
chr5 (196-322)||(2252142-2252268)
chr5 (196-328)||(33149606-33149738)
chr5 (196-328)||(33825292-33825424)
chr5 (196-328)||(36732910-36733042)
chr5 (191-322)||(3921239-3921370)
chr5 (196-327)||(40145407-40145538)
chr5 (277-336)||(2177445-2177504)
chr5 (196-322)||(28177775-28177901)
chr5 (196-322)||(42414276-42414402)
chr5 (196-336)||(13811652-13811792)
chr5 (196-328)||(14831814-14831946)
chr5 (196-328)||(35785199-35785331)
chr5 (197-256)||(36875644-36875702)
chr5 (196-317)||(6259980-6260101)
chr5 (201-258)||(10356639-10356696)
chr5 (241-324)||(21370048-21370132)
chr5 (241-328)||(31009032-31009120)
chr5 (246-308)||(25831334-25831397)
chr5 (196-322)||(26720516-26720642)
chr5 (196-322)||(26990265-26990391)
[»] chr7 (32 HSPs)
chr7 (196-330)||(18207180-18207313)
chr7 (196-336)||(35137533-35137673)
chr7 (238-328)||(36208214-36208305)
chr7 (196-328)||(19329842-19329974)
chr7 (196-336)||(38267040-38267180)
chr7 (196-328)||(41423682-41423814)
chr7 (196-328)||(8080351-8080483)
chr7 (196-336)||(38837217-38837357)
chr7 (196-322)||(7389389-7389515)
chr7 (238-336)||(27744269-27744368)
chr7 (196-322)||(40846087-40846213)
chr7 (199-328)||(3783998-3784127)
chr7 (196-337)||(35468814-35468955)
chr7 (196-300)||(3434562-3434666)
chr7 (196-328)||(4999482-4999614)
chr7 (196-300)||(36361909-36362013)
chr7 (219-322)||(8238236-8238339)
chr7 (219-317)||(2318222-2318320)
chr7 (196-322)||(22343361-22343487)
chr7 (196-322)||(32564400-32564526)
chr7 (196-322)||(41915741-41915867)
chr7 (237-322)||(16374798-16374884)
chr7 (185-267)||(46374832-46374913)
chr7 (196-328)||(19436155-19436287)
chr7 (196-300)||(36362026-36362130)
chr7 (196-320)||(39255900-39256023)
chr7 (201-322)||(35522881-35523002)
chr7 (196-328)||(40957707-40957839)
chr7 (241-320)||(3694411-3694491)
chr7 (187-258)||(10343602-10343672)
chr7 (196-322)||(38044197-38044323)
chr7 (245-322)||(32951467-32951545)
[»] scaffold1268 (1 HSPs)
scaffold1268 (196-328)||(897-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (196-328)||(897-1029)
[»] scaffold0321 (1 HSPs)
scaffold0321 (196-336)||(10069-10209)
[»] scaffold0237 (1 HSPs)
scaffold0237 (196-328)||(4029-4161)
[»] scaffold0018 (1 HSPs)
scaffold0018 (221-336)||(152523-152638)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 412
Target Start/End: Original strand, 41080528 - 41080924
Alignment:
Q  15 atgaaggtatagcttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgcaga 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080528 atgaatgtatagcttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgcaga 41080627  T
Q  115 ttctttatgtttgaagaagttgaagggaaatttcttattaggtattattatgatatgccaactttgtgtgactttaacaacgagtaatgatacatggaca 214  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||| ||||    
T  41080628 ttctttacgtttgaagaagttgaagggaaatttcttattaggtattattatgatataccaactctctatgactttaacaacgagtaatgatacatagaca 41080727  T
Q  215 tctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacccacacgagcacattttctctttcatctccttttctc 314  Q
    || ||| || |||||||||||| ||||||||||| ||||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||| |||||    
T  41080728 tcctta-gtagcaaaacaccct-ttgacacccacgcaaaaatctgatatgtggtcatgtggacccacacaagcacattttctctttcatctcctcttctc 41080825  T
Q  315 tcttcctagtgcataggatgtatgagaatcaagactgtctatgtaccatttttcttaacaaaatcgtgtgttc-atggttacataaatcctaatattct 412  Q
    |||||||||| |||||| ||||||||||| |||| ||| | |||| |||||| |||||||||||||||||||| ||||||| ||||||| |||||||||    
T  41080826 tcttcctagtacatagggtgtatgagaataaagagtgtttgtgtaacattttccttaacaaaatcgtgtgttcaatggttaaataaatcataatattct 41080924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 14623939 - 14623807
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| |||||| ||||||||||||| |||||||| ||||||| | ||||||||| ||||| |||||| |||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaagcacacttt 14623841  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||||||| || ||||||||| |||||||||    
T  14623840 ctctttcatcttctcttctctctttctagtgcat 14623807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 195 - 328
Target Start/End: Original strand, 8076392 - 8076525
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattt 293  Q
    |||||||||||||||  ||| | ||||||||||  ||||||| ||||||||||||||||||||||||| || || | ||||||||  ||| |||||| ||    
T  8076392 cgagtaatgatacataaacacccttaggtggcagtacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactt 8076490  T
Q  294 tctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||| |||||| |||||||||||||||||||    
T  8076491 tctctttcctctcctcttctctcttcctagtgcat 8076525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 13898154 - 13898026
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacattttc 295  Q
    |||||||||| ||  ||||| ||||||||||| |||||| ||||||||||||| |||||||| ||| ||| | ||||||||| ||||| |||||| ||||    
T  13898154 agtaatgatagataaacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacacgtgttcatgtggacctcacacaagcacactttc 13898056  T
Q  296 tctttcatctccttttctctcttcctagtg 325  Q
    |||||||||| || |||||||| |||||||    
T  13898055 tctttcatcttctcttctctctccctagtg 13898026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 17470405 - 17470545
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||| ||||||||||||| ||||| | || |||||||||||||||||| ||| || || | |||||||| |||| |||||| |||    
T  17470405 gagtaatgatacatagacacctttaggtggcaatacacctt-ttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 17470503  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||| | ||||||||||||| ||||| |||||||    
T  17470504 ctcttttctctcatcttctctcttcctaatgcatgggatgta 17470545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 35536626 - 35536758
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||||| ||| ||||||| ||||| | |||||||||||| |||||| | ||| ||||| |||||||||  |||| |||||| ||     
T  35536626 gagtaatgatacatagacatccttatgtggcaatacaccat-ttgacacccacataaaaatgtgacacgtggtcatgtggaccttacacaagcacacttc 35536724  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||||||| || |||||||||||||||||||    
T  35536725 ctctttcatcttctcttctctcttcctagtgcat 35536758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 49607414 - 49607546
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  49607414 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacacttt 49607512  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| || |||||||||| |||||    
T  49607513 ctcttttctctcctcttttctcttcctaatgcat 49607546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 53982011 - 53982143
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 53982109  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  53982110 ctcttttctctcctcttctctcttcctaatgcat 53982143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 1758516 - 1758424
Alignment:
Q  237 cttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||||||||||||||||| |||| |||| | |||||| |||||| | |||||||||||||||||||||| ||||||||||||| |||||    
T  1758516 cttgacacccacacaaaaatctgacatatggttacgtggactccacacaaacacattttctctttcatctcctcttctctcttcctaatgcat 1758424  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 337
Target Start/End: Original strand, 33644200 - 33644341
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | || |||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  33644200 gagtaatgatacatagacacccttgggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 33644298  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgtat 337  Q
    ||||||  |||||| ||||||||||||| ||||| || |||||    
T  33644299 ctcttttctctcctcttctctcttcctaatgcatggggtgtat 33644341  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 8956762 - 8956902
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||||| ||| ||||||| ||| ||| |||||||||||| |||||| | ||| ||| | |||||||||  |||| |||||| ||     
T  8956762 gagtaatgatacatagacatccttatgtggcaatacatcct-ttgacacccacataaaaatgtgacacgtgttcatgtggaccttacacaagcacacttc 8956860  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||||||| || |||||||||||||||||| ||| ||||    
T  8956861 ctctttcatcttctcttctctcttcctagtgcacagggtgta 8956902  T

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Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 26754700 - 26754822
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctt 299  Q
    ||||| ||| |||| | ||||||||||| ||||||| | |||| |||||||||||||| ||||||||| |  |||||||  ||| |||||||||||||||    
T  26754700 atgattcatagacacccttaggtggcaatacaccct-tggacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctt 26754798  T
Q  300 tcatctccttttctctcttcctag 323  Q
    || |||||| ||||||||||||||    
T  26754799 tcctctcctcttctctcttcctag 26754822  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 324
Target Start/End: Complemental strand, 30801829 - 30801705
Alignment:
Q  200 aatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctct 298  Q
    |||||||||| |||| | |||||||  || ||||||| |||| |||||||||||||| | |||||| || || ||||||| |||| ||||||||||||||    
T  30801829 aatgatacatagacacccttaggtgataatacaccct-ttgatacccacacaaaaatatgacatgtagtcatatggaccccacacaagcacattttctct 30801731  T
Q  299 ttcatctccttttctctcttcctagt 324  Q
    ||| |||| | |||||||||||||||    
T  30801730 ttcctctcatcttctctcttcctagt 30801705  T

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Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 54868995 - 54868855
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| |||    
T  54868995 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacacttt 54868897  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||| | ||||||||||||| |||||||| ||||    
T  54868896 ctcttttctctcatcttctctcttcctaatgcatagggtgta 54868855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 27714991 - 27714888
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  27714991 gagtaatgatacatagacacctttaggtggtaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 27714893  T
Q  295 ctctt 299  Q
    |||||    
T  27714892 ctctt 27714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 31456690 - 31456821
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttc 295  Q
    ||||||||||||| |||| |  |||| ||||| ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| ||||    
T  31456690 agtaatgatacatagacacccataggcggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttc 31456788  T
Q  296 tctttcatctccttttctctcttcctagtgcat 328  Q
    |||||  |||||| || |||||||||| |||||    
T  31456789 tcttttctctcctcttttctcttcctaatgcat 31456821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 52629305 - 52629440
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacccac-acgagcacattttctctt 299  Q
    ||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||   || |||||| ||||||||    
T  52629305 atgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctctt 52629403  T
Q  300 tcatctccttttctctcttcctagtgcataggatgta 336  Q
    |  |||| | ||||||||||||| ||||| |||||||    
T  52629404 ttctctcatcttctctcttcctaatgcatgggatgta 52629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 11141037 - 11140963
Alignment:
Q  292 tttctctttcatctccttttctctcttcctagtgcataggatgtatgagaatcaagactgtctatgtaccatttt 366  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||||| | |||  |||||||||| ||||||    
T  11141037 tttctctttcatctccttttctctcttcctagtacatggggtgtatgagactaaagggtgtctatgtaacatttt 11140963  T

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Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 26141632 - 26141515
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||| |  |||| ||||||| |||||| |||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacacttt 26141534  T
Q  295 ctctttcatctccttttct 313  Q
    ||||||  |||||| ||||    
T  26141533 ctcttttctctcctcttct 26141515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 35093592 - 35093717
Alignment:
Q  203 gatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttc 301  Q
    ||||||| |||| ||||||||| ||| ||| | | |||||| |||| ||||||||| ||||||||| ||||| || ||| || |||||| |||||||| |    
T  35093592 gatacatagacaactttaggtgacaatacaacat-ttgacatccacgcaaaaatctgacatgtggtcatgtgaactccatacaagcacactttctcttgc 35093690  T
Q  302 atctccttttctctcttcctagtgcat 328  Q
    ||||  |||||||||||||||||||||    
T  35093691 atctttttttctctcttcctagtgcat 35093717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 11095453 - 11095392
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||||||||||||||||    
T  11095453 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatct 11095392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 24700054 - 24699926
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||||| |||| |||||| ||| ||| |||||||||||| ||||||||  || ||||  | ||||||||   || | |||| |||    
T  24700054 gagtaatgatacatagacatccttagttggcaataca-ccttttgacacccacataaaaatctggcacgtggccacgtggaccctgtacaaacacacttt 24699956  T
Q  295 ctctttcatctccttttctctcttcctagt 324  Q
    ||||||| |||||| |||||||||||||||    
T  24699955 ctctttcctctcctcttctctcttcctagt 24699926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 36331407 - 36331303
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 316  Q
    |||||||||||  ||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||||||||| ||| || |||||||    
T  36331407 ttaggtggcaatgcaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctc 36331309  T
Q  317 ttccta 322  Q
    ||||||    
T  36331308 ttccta 36331303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 36707524 - 36707396
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacccacacgagcacattttc 295  Q
    |||||||||||||| || | | ||||||| ||| ||||||| |||||| |||||||||||||| ||| || || | ||||| ||   || ||||| ||||    
T  36707524 gagtaatgatacatagatacccttaggtgacaatacaccct-ttgacatccacacaaaaatctgacacgtagttacgtggatcc---cgcgcacactttc 36707429  T
Q  296 tctttcatctccttttctctcttcctagtgcat 328  Q
    |||||  |||||| ||||||||||||| |||||    
T  36707428 tcttttctctcctcttctctcttcctaatgcat 36707396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 48375754 - 48375679
Alignment:
Q  249 acaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctag 323  Q
    |||||||||| || |||||| |  |||||||  ||| ||||||||||||||||| |||||| ||||||||||||||    
T  48375754 acaaaaatctgacgtgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctctcttcctag 48375679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 11907371 - 11907488
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||| ||| |||| | ||  |||| ||||||||||||| ||||||||| || |||| ||| ||| ||||||||||    
T  11907371 gagttatgatacatagacacccttaggtgacaatacacac-ctgaacactcacacaaaaatctgacatgtggtcatatggaccccgcacaagcacatttt 11907469  T
Q  295 ctctttcatctccttttct 313  Q
    ||||||  |||||| ||||    
T  11907470 ctcttttctctcctcttct 11907488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 25395387 - 25395305
Alignment:
Q  243 acccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagt 324  Q
    |||||||||||||||| ||||||||  || | ||||| |||| | ||||||||||||||||||| || || |||||| |||||    
T  25395387 acccacacaaaaatctgacatgtggctatatagaccccacacaaacacattttctctttcatcttctcttttctctttctagt 25395305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 33118951 - 33118818
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||| | ||| || || | ||||| ||| ||  | |||| |||    
T  33118951 gagttatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaatttgacacgtagtcacgtggatccctcagaaacacacttt 33118853  T
Q  295 ctctttcatctcct-tttctctcttcctagtgcat 328  Q
    ||||||| ||||||  |||||||| ||||||||||    
T  33118852 ctctttcctctcctccttctctctccctagtgcat 33118818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 43746430 - 43746471
Alignment:
Q  287 cacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||| ||||||||||||||||| |||| ||||||||||||||    
T  43746430 cacaatttctctttcatctcctcttctttcttcctagtgcat 43746471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 25407225 - 25407126
Alignment:
Q  219 taggtggcaaaacaccctcttgacacccacacaaaaa-tctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 316  Q
    |||||||||| | |||| |||||||| |||||||||| ||| ||| ||| | || |||| ||||||| | |||| ||||||||||||||||| |||||||    
T  25407225 taggtggcaatataccc-cttgacacacacacaaaaaatctgacacgtgatcatatggatcccacacaaacacactttctctttcatctcctcttctctc 25407127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 47531864 - 47531991
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattt 293  Q
    ||||| ||||||||| |||||| |||| |||||| ||||| | || ||| |||||||| ||||| ||| ||||  || || ||||  ||| |||||| ||    
T  47531864 cgagttatgatacatagacatccttagatggcaatacacctt-ttaacatccacacaagaatctgacacgtggccatatgaaccccgcacaagcacactt 47531962  T
Q  294 tctctttcatctccttttctctcttccta 322  Q
    |||||||  |||||| |||||||||||||    
T  47531963 tctcttttctctcctattctctcttccta 47531991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 41575138 - 41575311
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc--acacgagcacatttt 294  Q
    ||||||||||||| |||||| |||| ||| || ||||||| ||||||  ||||||||||| | ||||||||| ||||||||||  |||| |||||| |||    
T  41575138 agtaatgatacatagacatccttagatggtaatacaccct-ttgacattcacacaaaaatttgacatgtggtcatgtggacccctacacaagcacacttt 41575236  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgtatgagaatcaagactgtctatgtaccatttttct 369  Q
    |||||||||||||| ||||||| ||||| |||||  ||||||||||||| || | |||||||||| |||||||||    
T  41575237 ctctttcatctcctcttctctcgtcctaatgcatgagatgtatgagaataaatagtgtctatgtaacatttttct 41575311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 17820104 - 17819972
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||| ||||||||| |||| || |||||||||| |||||| |||||||||||||||||||||| ||||||||| | |||||||| |||| | ||||||||    
T  17820104 gagttatgatacatagacaactataggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggttacgtggaccccacacaaacacatttt 17820006  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||||||||| ||||||||||||| |||||    
T  17820005 ctctttcatctcctcttctctcttcctaatgcat 17819972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 9058480 - 9058612
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  9058480 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 9058578  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  9058579 ctcttttctctcctcttctctcttcctaatgcat 9058612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 33436200 - 33436068
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||    
T  33436200 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacacttt 33436102  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||| |||| | ||||||||||||| |||||    
T  33436101 ctctttcctctcatcttctctcttcctaatgcat 33436068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 328
Target Start/End: Original strand, 28863458 - 28863587
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| ||||||    
T  28863458 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 28863556  T
Q  298 tttcatctccttttctctcttcctagtgcat 328  Q
    ||| ||||||| ||||||||||||| |||||    
T  28863557 ttttatctcctcttctctcttcctaatgcat 28863587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 7465835 - 7465703
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||| | |||| |||||| ||||||| ||||||||||||||||||||| ||| || || | |||||||| |||| |||||| |||    
T  7465835 gagtaatgatacatagacacccttagatggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 7465737  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||| ||||| | ||||||||||||| |||||    
T  7465736 ctcttttatctcttcttctctcttcctaatgcat 7465703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 17473020 - 17473152
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||| |||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 17473118  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  17473119 ctcttttctctcctcttctctcttcctaatgcat 17473152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 20700815 - 20700947
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||||| ||| ||||||| ||||||| ||||| || |||||||||||| ||| || || | ||||||||  ||  |||||| |||    
T  20700815 gagtaatgatacatagacatccttatgtggcaatacaccct-ttgactcctacacaaaaatctgacacgtagtcacgtggaccccgcataagcacacttt 20700913  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||| |||||| |||||||||||||||||||    
T  20700914 ctctttcctctcctcttctctcttcctagtgcat 20700947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 26891604 - 26891478
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||| ||||||||| | || | ||||||||||| |||||| || ||||||||||||||||||| ||||||||| | ||||||| |  || ||||||||||    
T  26891604 gagttatgatacatagccacccttaggtggcaatacaccc-ctagacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacatttt 26891506  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  26891505 ctctttcctcttctcttctctcttccta 26891478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 323
Target Start/End: Original strand, 3440001 - 3440106
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 316  Q
    ||||||||||| |||| | || ||||||||||||||||||||||||||| | | ||||| ||| ||| ||||||||||||||||| |||||| |||||||    
T  3440001 ttaggtggcaatacactc-ctggacacccacacaaaaatctaacatgtgattacgtggaccccgcacaagcacattttctctttcctctcctcttctctc 3440099  T
Q  317 ttcctag 323  Q
    || ||||    
T  3440100 tttctag 3440106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 328
Target Start/End: Complemental strand, 19930917 - 19930788
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||||||| |||||| |||||||||||||| ||| || || ||||||||||  ||| | |||| ||||||    
T  19930917 taatgatacatagacacccttaggtggcaatacaccct-ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacacactttctc 19930819  T
Q  298 tttcatctccttttctctcttcctagtgcat 328  Q
    |||  |||||| ||||||||||||| |||||    
T  19930818 ttttctctcctcttctctcttcctaatgcat 19930788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 13438343 - 13438475
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||| ||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  13438343 gagtaatgatacatagacacccttaggtgacaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 13438441  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  13438442 ctcttttctctcctcttctctcttcctaatgcat 13438475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 3737986 - 3738070
Alignment:
Q  240 gacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctag 323  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| ||| |||||||||||| |||| |||||| |||| |||||||||    
T  3737986 gacacccacacaaaaatctgacatgtggtcatgtggaccccgcacaagcacattttctttttcctctcctcttctttcttcctag 3738070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 366
Target Start/End: Original strand, 33436211 - 33436381
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 294  Q
    |||||||||||||| |||||| |||| |||||| ||| ||| |||||||||||| |||||||| ||| |||   ||||||||    ||| |||||| |||    
T  33436211 gagtaatgatacatagacatccttagatggcaataca-ccttttgacacccacataaaaatctgacacgtgaccatgtggactttgcacaagcacacttt 33436309  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgtatgagaatcaagactgtctatgtaccatttt 366  Q
    ||||||| | |||| ||||||||||||||| |||  | ||||||||||| ||   |||||||||| ||||||    
T  33436310 ctctttcctatcctcttctctcttcctagttcatgaggtgtatgagaataaaaggtgtctatgtaacatttt 33436381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 2997565 - 2997461
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 316  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||||||||| ||| || |||||||    
T  2997565 ttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctc 2997467  T
Q  317 ttccta 322  Q
    ||||||    
T  2997466 ttccta 2997461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 10249482 - 10249350
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  10249482 gagtaatgatacatagacacccttaggtgacaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 10249384  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| || |||||||||| |||||    
T  10249383 ctcttttctctcctcttttctcttcctaatgcat 10249350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 40701478 - 40701610
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| |||    
T  40701478 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacacttt 40701576  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||| | ||||||||||||| |||||    
T  40701577 ctcttttctctcatcttctctcttcctaatgcat 40701610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 45097835 - 45097695
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||||| ||||||||||| ||| || ||||||||||| |||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  45097835 gagttatgatacataaacatccttaggtggcaatacatcc-cttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 45097737  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||| ||| || ||||||||||||| | ||| |||||||    
T  45097736 ctctttcttcttctcttctctcttcctaatacatcggatgta 45097695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 40614002 - 40613879
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| ||||  |  |||| ||| ||| |||||| |||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacacttt 40613904  T
Q  295 ctctttcatctccttttctctcttc 319  Q
    ||||||  |||||| |||| |||||    
T  40613903 ctcttttctctcctattctttcttc 40613879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 38732394 - 38732480
Alignment:
Q  237 cttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttccta 322  Q
    |||||||||||||||||||||| ||||||||| || |||| ||| ||| || ||| |||||||||| ||| || |||||||||||||    
T  38732394 cttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttctctttcttcttctcttctctcttccta 38732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 32505748 - 32505616
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  32505748 gagtaatgatacatagacacccttaggtgacaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 32505650  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    || |||  |||||| |||||||||| || |||||    
T  32505649 ctattttctctcctcttctctcttcttaatgcat 32505616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 43490121 - 43490261
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||| ||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  43490121 gagttatgatacataaacacccttaggtgacaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 43490219  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
     |||||| ||| || ||||||||||||| | |||||| ||||    
T  43490220 atctttcttcttctcttctctcttcctaatacatagggtgta 43490261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 28381755 - 28381629
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| | ||||||||||||||||||| ||| || || |  ||||| || ||| |||||| |||    
T  28381755 gagtaatgatacatagacacccttaggtggcaataca-cctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagcacacttt 28381657  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||| | |||||||||||||    
T  28381656 ctcttttctctcatcttctctcttccta 28381629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 30915463 - 30915589
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||| |||||| |||||||| ||| || || | ||||| |||  || |||||| |||    
T  30915463 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacacttt 30915561  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||| | |||||||||||||    
T  30915562 ctcttttctctcatcttctctcttccta 30915589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 42257193 - 42257319
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||||||||||||||| ||| | | |||||||||||| |||||||| ||| ||||  |  |||| ||| ||| |||||| |||    
T  42257193 gagttatgatacatagacatctttaggtggcaatacatcat-ttgacacccacataaaaatctgacacgtggccacatggaccccgcacaagcacacttt 42257291  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||||| |||| ||||||||    
T  42257292 ctcttttctctcctcttctttcttccta 42257319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 44152008 - 44152059
Alignment:
Q  277 cccacacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||| |||||    
T  44152008 cccacacaagcacactttctctttcatctcctcttctctcttcctaatgcat 44152059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 5574588 - 5574484
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| ||||   ||||||||||| ||||||| |||||||||||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  5574588 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 5574490  T
Q  295 ctcttt 300  Q
    ||||||    
T  5574489 ctcttt 5574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 13365393 - 13365479
Alignment:
Q  237 cttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttccta 322  Q
    |||||||||||||||||||||| |||||||   || |||| ||| ||| || ||| |||||||||| ||| || |||||||||||||    
T  13365393 cttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactttctctttcttcttctcttctctcttccta 13365479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 27864704 - 27864765
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| | ||| ||||||| ||||||| |||||| ||||||||||||||    
T  27864704 gagtaatgatacatagacacccttatgtggcaatacaccct-ttgacatccacacaaaaatct 27864765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 4060685 - 4060817
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||| ||| |||||| |||||||||||||| ||| || || | ||||| ||| ||  |||||| |||    
T  4060685 gagtaatgatacatagacacccttaggtgacaataca-ccttttgacatccacacaaaaatctgacacgtagttacgtggatcccgcataagcacacttt 4060783  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    || |||  |||| | ||||||||||||| |||||    
T  4060784 cttttttctctcatcttctctcttcctaatgcat 4060817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 41758677 - 41758713
Alignment:
Q  286 gcacattttctctttcatctccttttctctcttccta 322  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  41758677 gcacattttctcttttatctcctcttctctcttccta 41758713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 196 - 366
Target Start/End: Original strand, 3481654 - 3481824
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||| ||||||||||||| |||| || ||||||||||||||||||||| |||  | || | |||||||| |||| |||||| |||    
T  3481654 gagtaatgatacatagacacctttaggtggcaatacactct-ttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacacttt 3481752  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgtatgagaatcaagactgtctatgtaccatttt 366  Q
    ||||||| || | | ||||||||| |||||||||||| ||||||||||| |||  |||||||||| ||||||    
T  3481753 ctctttcctcccatcttctctctttctagtgcatagggtgtatgagaataaagggtgtctatgtaacatttt 3481824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 50052528 - 50052395
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 50052430  T
Q  295 ctctttcatctccttttctctcttcctagtgcata 329  Q
    ||||||| |||||| ||||||||||||||||||||    
T  50052429 ctctttcctctcctcttctctcttcctagtgcata 50052395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 29239886 - 29240018
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||| | |||||| |||||||||||||||||| || || | |||||||| |||| |||||| |||    
T  29239886 gagtaatgatacatagacacccttaggtggcaatacaccat-ttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacacttt 29239984  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||| |||||| |||||||||||||||||||    
T  29239985 ctctttcctctcctcttctctcttcctagtgcat 29240018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 50526271 - 50526139
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||| | |||||  || ||| |||||  |||    
T  50526271 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtggtcacgtggattccgcacaagcacgcttt 50526173  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    || |||| |||||| |||||||||||||||||||    
T  50526172 ctatttcctctcctcttctctcttcctagtgcat 50526139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 6034044 - 6034176
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| |||||| || | ||||| ||| ||| |||||| |||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacacttt 6034142  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  6034143 ctcttttctctcctcttctctcttcctaatgcat 6034176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 48647789 - 48647686
Alignment:
Q  234 cctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttcatctccttttctctcttcctagtgcatagga 332  Q
    |||||| ||||||||| |||||||||||| ||||| | |||||| || ||| |||||| |||||||||| |||||| ||||||||||||||||||||| |    
T  48647789 cctcttaacacccacataaaaatctaacacgtggtcacgtggactccgcacaagcacaatttctctttcctctcctcttctctcttcctagtgcatagaa 48647690  T
Q  333 tgta 336  Q
    ||||    
T  48647689 tgta 48647686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 364
Target Start/End: Complemental strand, 29234345 - 29234177
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | |||| |||||| ||||||| |||| |||  ||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  29234345 gagtaatgatacatagacacccttagatggcaatacaccct-ttgataccttcacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 29234247  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgtatgagaatcaagactgtctatgtaccatt 364  Q
    ||||||  |||||| ||||||||||||| ||||| || ||||||||||| || | |||||||||| ||||    
T  29234246 ctcttttctctcctcttctctcttcctaatgcatggggtgtatgagaataaatagtgtctatgtatcatt 29234177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 328
Target Start/End: Original strand, 41236346 - 41236479
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattt 293  Q
    ||||||||||||||| |||| | ||||||||||| ||| ||| |||||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| ||    
T  41236346 cgagtaatgatacatagacacccttaggtggcaataca-ccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 41236444  T
Q  294 tctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||  |||||| ||||||||||||| |||||    
T  41236445 tctcttttctctcctcttctctcttcctaatgcat 41236479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 336
Target Start/End: Complemental strand, 42044476 - 42044327
Alignment:
Q  187 tttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacga 285  Q
    ||||| || |||||||||||||| |||| | ||||||||||| ||| |||  | |||||||||||||||||| ||| || || | ||||||||  ||| |    
T  42044476 tttaaaaaagagtaatgatacatagacacccttaggtggcaatacatccttgt-acacccacacaaaaatctgacacgtagtcacgtggaccccgcacaa 42044378  T
Q  286 gcacattttctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||| |||||||||  |||||| ||||||||||||| ||||| |||||||    
T  42044377 gcacactttctcttttctctcctcttctctcttcctaatgcatgggatgta 42044327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 480547 - 480415
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacccac-acgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||   || |||||| |||    
T  480547 gagtaatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacacttt 480449  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  480448 ctcttttctctcctcttctctcttcctaatgcat 480415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 28480329 - 28480236
Alignment:
Q  236 tcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||| |||| ||||||||||||| |||||| || |||||||||| |||| | |||| |||||| |||||||||| |||||||||||||||||||    
T  28480329 tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctccttcatctcctcttctctcttcctagtgcat 28480236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 28481204 - 28481111
Alignment:
Q  236 tcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||| |||| ||||||||||||| |||||| || |||||||||| |||| | |||| |||||| |||||||||| |||||||||||||||||||    
T  28481204 tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctccttcatctcctcttctctcttcctagtgcat 28481111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 28482079 - 28481986
Alignment:
Q  236 tcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||| |||| ||||||||||||| |||||| || |||||||||| |||| | |||| |||||| |||||||||| |||||||||||||||||||    
T  28482079 tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctccttcatctcctcttctctcttcctagtgcat 28481986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 48183149 - 48183017
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||| ||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  48183149 gagtaatgatacatagacacccttacgtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 48183051  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| |||||||||| || |||||    
T  48183050 ctcttttctctcctcttctctcttcttaatgcat 48183017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 54473633 - 54473507
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||    
T  54473633 gagtaatgatacatagacacccttaggtgacaatacaccat-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacacttt 54473535  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
     |||||  |||||| |||||||||||||    
T  54473534 atcttttctctcctcttctctcttccta 54473507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 55475191 - 55475317
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||| |||||||||  ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||  || |||||||  ||  || ||| |||    
T  55475191 gagttatgatacataaacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtggccatatggaccctgcataagtacacttt 55475289  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  55475290 ctctttcttcttctcttctctcttccta 55475317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 18769103 - 18769021
Alignment:
Q  241 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttccta 322  Q
    |||||||||||||||||| ||||||||| ||||  | ||||||| | |||||||||||||||||||| |||| ||||||||||    
T  18769103 acacccacacaaaaatctgacatgtggtcatgtaaatcccacacaaacacattttctctttcatctcattttttctcttccta 18769021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 11511562 - 11511430
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||||||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 11511464  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  ||| || |||||||||| || |||||    
T  11511463 ctcttttctcttctcttctctcttcttaatgcat 11511430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 17983821 - 17983717
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 316  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||||||||| ||| || |||||||    
T  17983821 ttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctc 17983723  T
Q  317 ttccta 322  Q
    ||||||    
T  17983722 ttccta 17983717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 23608235 - 23608367
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 294  Q
    ||||||||||| || |||| | |||| || ||| ||||| | ||||||||||||||||||||| ||| || || | ||| || |||||| |||||| |||    
T  23608235 gagtaatgatatatagacacccttagatgacaatacaccat-ttgacacccacacaaaaatctgacacgtagtcacgtgaactccacacaagcacacttt 23608333  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||| ||||||| ||||||||||||| |||||    
T  23608334 ctcttttatctcctcttctctcttcctaatgcat 23608367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 24995207 - 24995075
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    ||||||||||| ||||||| | |||| |||||| ||||||| |||||||||||| |||||| | ||| || || | ||||||||  ||| ||||||||||    
T  24995207 gagtaatgatatatggacacccttagatggcaatacaccct-ttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacatttt 24995109  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| |||||||||| || |||||    
T  24995108 ctcttttctctcctcttctctcttcttaatgcat 24995075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 55079814 - 55079687
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga--cccacacgagcacattt 293  Q
    |||| |||||||||  ||| | ||||||||||| ||||| |||||||||||| |||||||||| ||||||||  || ||||  ||||||| || ||| ||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacc-tcttgacacccatacaaaaatctgacatgtggccatatggacccccacacaagtacactt 55079716  T
Q  294 tctctttcatctccttttctctcttccta 322  Q
    |||||||| ||| || |||||||||||||    
T  55079715 tctctttcttcttctcttctctcttccta 55079687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 19670816 - 19670690
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||| ||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  19670816 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacactcacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 19670718  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  19670717 ctctttcttcttctcttctctcttccta 19670690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 44536845 - 44536706
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  |||  |||||||||||| |||||||  ||||| |||||||||||||| ||||||||| || | || ||||||  || ||| |||    
T  44536845 gagttatgatacataaacacttttaggtggcaatacaccct--tgacatccacacaaaaatctgacatgtggtcatatagaccccacataagtacacttt 44536748  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||| ||| || ||||||||||||| | |||||| ||||    
T  44536747 ctctttcttcttctcttctctcttcctaatacatagggtgta 44536706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 50813970 - 50813866
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 316  Q
    |||||||| || |||||| |||||||||||||||||||||| ||||||||| || || | ||| ||| || ||| |||||||||| ||| || |||||||    
T  50813970 ttaggtggtaatacaccc-cttgacacccacacaaaaatctgacatgtggtcatatgaaccccgcacaagtacactttctctttcttcttctcttctctc 50813872  T
Q  317 ttccta 322  Q
    ||||||    
T  50813871 ttccta 50813866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 18769153 - 18769237
Alignment:
Q  241 acacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagt 324  Q
    |||||||||||||||||| ||| ||||| ||||  |||| |||| |  |||||||||||||||||||||||| |||||| |||||    
T  18769153 acacccacacaaaaatctgacacgtggtcatgtaaaccccacacaaatacattttctctttcatctccttttttctctttctagt 18769237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 29548059 - 29547989
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||    
T  29548059 gagttatgatacataaacatccttaggtggcaatacatcc-cttgacacccacacaaaaatctgacatgtgg 29547989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 29977908 - 29977994
Alignment:
Q  219 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatct 305  Q
    |||||||||| |||||| ||| |||||||||||||||||| ||| || || || ||||||| |||| |||||| ||||||||||||||    
T  29977908 taggtggcaatacaccc-cttaacacccacacaaaaatctgacacgtagtcatatggaccccacacaagcacactttctctttcatct 29977994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 29589800 - 29589714
Alignment:
Q  237 cttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttccta 322  Q
    |||||||||||||||||||||| | ||||||  || |||| ||||||| || ||| |||||||||| ||| || |||||||||||||    
T  29589800 cttgacacccacacaaaaatctgatatgtggccatatggaccccacacaagtacactttctctttcttcttctcttctctcttccta 29589714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 40574779 - 40574840
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||| ||||||||| |||||| |||||||| || ||||||| |||||||||||||||||||||    
T  40574779 gagttatgatacatagacatccttaggtggtaatacaccct-ttgacacccacacaaaaatct 40574840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 18924573 - 18924469
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttcatctccttttctctc 316  Q
    ||||||||||| |||||| ||||| | |||||||||||||| |||||||| ||| || || || ||| || ||| |||||||||| ||| || |||||||    
T  18924573 ttaggtggcaatacaccc-cttgatatccacacaaaaatctgacatgtggcaatatgaactccgcacaagtacactttctctttcttcttctcttctctc 18924475  T
Q  317 ttccta 322  Q
    ||||||    
T  18924474 ttccta 18924469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 47104544 - 47104676
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    ||||||||||| || |||||  |||| || ||| |||| |||| ||||||||||||||||| | ||| |||||  | | ||||| |||| | |||| |||    
T  47104544 gagtaatgatatatagacattcttagatgacaatacactctct-gacacccacacaaaaatttgacacgtggttttattgaccccacacaaacacacttt 47104642  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||||||||| |||||||||| || |||||    
T  47104643 ctctttcatctcctcttctctcttcttaatgcat 47104676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 47986208 - 47986348
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| ||| || ||||||| |||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  47986208 gagttatgatacataaacacccttaggtggcaatacatcc-cttgacatccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 47986306  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||| | | || ||||||||||||| | ||| |||||||    
T  47986307 ctctttcttattctcttctctcttcctaatacatgggatgta 47986348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 31910192 - 31910253
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||| ||||||||| |||||| ||||||| ||| |||| || |||||||||||||||||||||    
T  31910192 gagttatgatacatagacatccttaggtgacaatacactct-ttgacacccacacaaaaatct 31910253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 32766980 - 32767028
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    ||||||||||| |||||| ||||||||||| |||||||||| ||||||||    
T  32766980 ttaggtggcaatacaccc-cttgacacccatacaaaaatctgacatgtgg 32767028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 8343264 - 8343193
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    ||||| |||||||||  ||||| ||||||||||| ||| ||| |||||||| ||| |||||||| ||||||||    
T  8343264 cgagttatgatacataaacatccttaggtggcaatacatcct-ttgacacctacataaaaatctgacatgtgg 8343193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 37038479 - 37038611
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 37038577  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    || |||| |||||| |||||||||||||||||||    
T  37038578 ctatttcctctcctcttctctcttcctagtgcat 37038611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 5957831 - 5957962
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttc 295  Q
    ||||||||||||| |||||  ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| ||||    
T  5957831 agtaatgatacatagacattcttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttc 5957929  T
Q  296 tctttcatctccttttctctcttcctagtgcat 328  Q
    |||||| |||||| |||||||||||||||||||    
T  5957930 tctttcctctcctcttctctcttcctagtgcat 5957962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 43414681 - 43414555
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| |||| |||||| ||||||| ||||||||||||||||||||||||| ||||| |  |||| ||| ||| |||||| |||    
T  43414681 gagttatgatacatagacatccttagatggcaacacaccct-ttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagcacacttt 43414583  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||||| |||||||||||||    
T  43414582 ctcttttctctcctcttctctcttccta 43414555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 328
Target Start/End: Complemental strand, 1180041 - 1179908
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattt 293  Q
    ||||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||||| ||| || || |||||||  || ||| |||||| ||    
T  1180041 cgagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactt 1179943  T
Q  294 tctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||  |||||| ||||||||||||| |||||    
T  1179942 tctcttttctctcctcttctctcttcctaatgcat 1179908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 12831047 - 12831179
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 12831145  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  12831146 ctcttttctctcctcttctctcttcctaatgcat 12831179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 8841510 - 8841400
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctc 316  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| || || | ||||||||  ||| |||||| |||||||||| |||||| ||||||     
T  8841510 ttaggtggcagtacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctcttctctt 8841412  T
Q  317 ttcctagtgcat 328  Q
    ||||||||||||    
T  8841411 ttcctagtgcat 8841400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 40424043 - 40423917
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| || | | ||||||||||| ||||||| |||||| |||||||||||||| ||| || || ||||||||||  ||| |||||| |||    
T  40424043 gagtaatgatacatagatacccttaggtggcaatacaccct-ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 40423945  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||||| |||||||||||||    
T  40423944 ctcttttctctcctcttctctcttccta 40423917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 14547922 - 14548054
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||| ||||||| |||| | ||||||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  14547922 gagtaaagatacatagacacccttaggtggcaatacaccat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 14548020  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  14548021 ctcttttctctcctcttctctcttcctaatgcat 14548054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 34012396 - 34012264
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||| | ||| || || | ||||| ||| ||| |||||| |||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacacttt 34012298  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  34012297 ctcttttctctcctcttctctcttcctaatgcat 34012264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 16383377 - 16383503
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  16383377 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 16383475  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  16383476 ctctttcttcttctcttctctcttccta 16383503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 504221 - 504089
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| ||||||  ||    
T  504221 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacatt 504123  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||| | ||||||||||||| |||||    
T  504122 ctcttttctctcatcttctctcttcctaatgcat 504089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 320
Target Start/End: Original strand, 15197333 - 15197457
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| ||||   ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  15197333 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 15197431  T
Q  295 ctctttcatctccttttctctcttcc 320  Q
    ||||||  |||||| || ||||||||    
T  15197432 ctcttttctctcctcttttctcttcc 15197457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 15258986 - 15258889
Alignment:
Q  240 gacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    |||| ||||| |||||||| ||||||||| | ||||||||  ||| ||||||||||||||||| |||||| ||||||||||||||   ||||||||||    
T  15258986 gacatccacataaaaatctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctcctcttctctcttcctagaatataggatgta 15258889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 17443825 - 17443957
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||| ||| ||||  |||| |||| ||||||||||||| |||||| || |||||||||| |||| |  ||| |||    
T  17443825 gagttatgatacatagacaaccttaggtgacaatacact-tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaagacacttt 17443923  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||||||| || ||||||||||| |||||||    
T  17443924 ctctttcatcttctcttctctcttcccagtgcat 17443957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 23122697 - 23122565
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | ||| ||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||  ||  |||||| |||    
T  23122697 gagtaatgatacatagacacccttaagtggcaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacacttt 23122599  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  23122598 ctcttttctctcctgttctctcttcctaatgcat 23122565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 34307216 - 34307342
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || || | ||| ||| || ||| |||    
T  34307216 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggacatatgaaccccgcacaagtacacttt 34307314  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  34307315 ctctttcttcttctcttctctcttccta 34307342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 366
Target Start/End: Complemental strand, 10621182 - 10621017
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 299  Q
    ||||||||| |||||| |||||||| || ||||||| ||||||||||||||||||||| ||| || |  |  | || ||| ||| |||||| ||||||||    
T  10621182 atgatacatagacatccttaggtggtaatacaccct-ttgacacccacacaaaaatctgacacgtagccacatcgatcccgcacaagcacactttctctt 10621084  T
Q  300 tcatctccttttctctcttcctagtgcataggatgtatgagaatcaagactgtctatgtaccatttt 366  Q
    |  |||||| ||||||||||||| |  || ||||||||| |||| ||   |||||||||| ||||||    
T  10621083 ttctctcctcttctctcttcctaatatatgggatgtatgggaataaaagatgtctatgtaacatttt 10621017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 4854963 - 4854823
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||||||| || ||||| ||| |||||||| | ||||||  |  |||||||  ||| |||||| |||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacaccct-ttaacacctacataaaaatctgatatgtggccacatggaccctgcacaagcacacttt 4854865  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||| ||| || || |||||||    
T  4854864 ctcttttctctcctcttctctcttactaatgtatgggatgta 4854823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 9122229 - 9122317
Alignment:
Q  241 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||||||||||||| |||||| || | ||||| ||| ||| |||||| |||||||||  |||||| ||||||||||||| |||||    
T  9122229 acacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcat 9122317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 16056501 - 16056375
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||||| ||| ||| ||| ||| || |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  16056501 gagttatgatacataaacatccttatgtgacaatacatcc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 16056403  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  16056402 ctctttcttcttctcttctctcttccta 16056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 24307893 - 24307767
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| ||| || |||||||||||||||||||||| | ||||||  || |||| ||| ||| || ||| |||    
T  24307893 gagttatgatacataaacacccttaggtggcaatacatcc-cttgacacccacacaaaaatctgatatgtggccatatggaccccgcacaagtacacttt 24307795  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  24307794 ctctttcttcttctcttctctcttccta 24307767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 30479574 - 30479448
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| ||||||| |||||| ||||| |||||||| ||||||||  || |||||| | ||| || ||| |||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccct-ttgacatccacataaaaatctgacatgtggctatatggacctcgcacaagtacacttt 30479476  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  30479475 ctctttcttcttctcttctctcttccta 30479448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 15048281 - 15048141
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| |||||| |||||||||||||| ||| || |  |  |||| ||| ||| |||||| |||    
T  15048281 gagttatgatacatagacatccttaggtggcaatacaccct-ttgaca-ccacacaaaaatctgacacgtagccacatggaccccgcacaagcacacttt 15048184  T
Q  295 ctc-tttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||| ||| ||||||| ||||||||||||| || || |||||||    
T  15048183 ctctttttatctcctcttctctcttcctaatgtatgggatgta 15048141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 366
Target Start/End: Complemental strand, 20075034 - 20074872
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| |||| || |||||||||||| |||||| | ||        | ||||||||  ||| |||||| |||    
T  20075034 gagtaatgatacatagacatccttaggtggcaatacactct-ttgacacccacataaaaatgtgac--------acgtggaccctgcacaagcacacttt 20074944  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgtatgagaatcaagactgtctatgtaccatttt 366  Q
    ||||||| ||| || ||||||||||||||| |||  | ||||||||||| ||   |||||||||| ||||||    
T  20074943 ctctttcctcttctcttctctcttcctagttcatgaggtgtatgagaataaaatgtgtctatgtaacatttt 20074872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 10284731 - 10284599
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||| ||| ||| |||| || ||||||||||||||||||| | ||| || || | ||||||||  ||| |||||| |||    
T  10284731 gagttatgatacatagacacccttaagtgacaatacactct-ttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcacacttt 10284633  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||| | || | |||||||||||||||||||    
T  10284632 ctctttcctttcatcttctctcttcctagtgcat 10284599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 320
Target Start/End: Original strand, 42221515 - 42221639
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    ||||||||||||||  ||||| ||||||| ||| |||  | || ||||||||||||||||||| ||| ||  | || ||||||| | || |||||| |||    
T  42221515 gagtaatgatacatatacatccttaggtgacaatacattc-ctggacacccacacaaaaatctgacacgtaatcatatggaccccatacaagcacacttt 42221613  T
Q  295 ctctttcatctccttttctctcttcc 320  Q
    |||||||||||| | |||||||||||    
T  42221614 ctctttcatctcatcttctctcttcc 42221639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 42354599 - 42354556
Alignment:
Q  285 agcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||| |||||||||||||| || |||||||||||||||||||    
T  42354599 agcacactttctctttcatcttctcttctctcttcctagtgcat 42354556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 44507187 - 44507055
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || |||| || || |||||||||||||||||| ||| || || | ||||| |||  || |||| | |||    
T  44507187 gagtaatgatacatagacacccttaggtggtaatacactct-ttaacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcatacttt 44507089  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||| | ||||||||||||| |||||    
T  44507088 ctcttttctctcatcttctctcttcctaatgcat 44507055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 14055693 - 14055610
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    ||||| ||||||||| |||| | ||||||| ||| |||| | ||||||| |||||||||||||| |||||| || | ||||||||    
T  14055693 cgagttatgatacattgacacccttaggtgacaatacactc-cttgacatccacacaaaaatcttacatgtagtcacgtggaccc 14055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 31953130 - 31952998
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    ||||||||||| || |||||| ||||||||||| |||||| ||||||||||||| |||||||| ||||||| | ||||||||| ||||| | |||| |||    
T  31953130 gagtaatgatagatagacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaaacacacttt 31953032  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||||||| || |||||||||||||||||||    
T  31953031 ctctttcatcttctcttctctcttcctagtgcat 31952998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 32869678 - 32869810
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||| ||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  32869678 gagtaaagatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 32869776  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  32869777 ctcttttctctcctcttctctcttcctaatgcat 32869810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 12732523 - 12732615
Alignment:
Q  238 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcata 329  Q
    ||||||||||||||||||||| ||| ||||  ||||||| ||||||  |||||||||||||||||||||||| ||||||||| ||||| ||||    
T  12732523 ttgacacccacacaaaaatctgacacgtggctatgtggatcccacataagcacattttctctttcatctcctcttctctctttctagtacata 12732615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 17598554 - 17598686
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  17598554 gagtaatgatacatagacacccttaggtggcaatacatctt-ttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacacttt 17598652  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  17598653 ctcttttctctcctcttctctcttcctaatgcat 17598686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 22880755 - 22880632
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||| ||| ||| || || | ||||||||  ||| |||||| ||||||    
T  22880755 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctc 22880657  T
Q  298 tttcatctccttttctctcttccta 322  Q
    |||  |||||| |||||||||||||    
T  22880656 ttttctctcctcttctctcttccta 22880632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 322
Target Start/End: Complemental strand, 30341465 - 30341334
Alignment:
Q  191 acaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcac 289  Q
    |||| |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||    
T  30341465 acaaagagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtac 30341367  T
Q  290 attttctctttcatctccttttctctcttccta 322  Q
    | |||||||||| ||| || |||||||||||||    
T  30341366 actttctctttcttcttctcttctctcttccta 30341334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 15508124 - 15507998
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 15508026  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  15508025 ctctttcttcttctcttctctcttccta 15507998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 15990142 - 15990016
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  15990142 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 15990044  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  15990043 ctctttcttcttctcttctctcttccta 15990016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 28536582 - 28536456
Alignment:
Q  200 aatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctct 298  Q
    ||||||||||  ||||| ||||||||||| ||| || |||||||||||||||||||||| |||   ||| ||||||| ||||||| |||||| |||||||    
T  28536582 aatgatacataaacatccttaggtggcaatacaacc-cttgacacccacacaaaaatctgaca--cggtcatgtggaccccacacaagcacactttctct 28536486  T
Q  299 ttcatctccttttctctcttcctagtgcat 328  Q
    || |||| || ||| ||||||||| |||||    
T  28536485 tttatcttctcttccctcttcctactgcat 28536456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 6209565 - 6209425
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||  | ||||||| |||||||||||||  || || || | ||||||||  ||| |||||| |||    
T  6209565 gagtaatgatacatagacacccttaggtggcaatacactat-ttgacactcacacaaaaatctgtcacgtagtcacgtggaccccgcactagcacacttt 6209467  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||||||| ||||| |||||||    
T  6209466 ctcttttctctcctcttctctcttcctaatgcatgggatgta 6209425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 11427616 - 11427750
Alignment:
Q  196 gagtaatgatacatggacatctt--taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatt 292  Q
    |||||||||||||| |||| | |  |||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |    
T  11427616 gagtaatgatacatagacaccctcttaggtggcaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacact 11427714  T
Q  293 ttctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||||  |||||| ||||||||||||| |||||    
T  11427715 ttctcttttctctcctcttctctcttcctaatgcat 11427750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 23128186 - 23128087
Alignment:
Q  238 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||||||||  |||||| || |||||||||| ||||| |||||||    
T  23128186 ttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttttctctcctcttttctcttcctaatgcatgggatgta 23128087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 31976248 - 31976374
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| | ||||| || |||||||||||||||||| ||| ||||| |  || ||||  ||| |||||| |||    
T  31976248 gagttatgatacatagacatccttaggtggcaatataccct-ttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcacacttt 31976346  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||||| |||||||||||||    
T  31976347 ctcttttctctcctcttctctcttccta 31976374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 329
Target Start/End: Complemental strand, 9379807 - 9379679
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacattttctctt 299  Q
    ||||||||| |||||| |||| || ||| ||| || ||||||||||| |||||||| | ||| ||||  ||||||| | ||||| | |||||||||||||    
T  9379807 atgatacatagacatccttagatgacaatacatcc-cttgacacccatacaaaaatttgacacgtggccatgtggatctcacacaaacacattttctctt 9379709  T
Q  300 tcatctccttttctctcttcctagtgcata 329  Q
    |||||| || || |||||||||| ||||||    
T  9379708 tcatcttctcttttctcttcctaatgcata 9379679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 29857827 - 29857959
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| |||||| |||||| ||| ||| || |||||||||||||||||| ||| || || | ||||| ||| ||  |||||| |||    
T  29857827 gagtaatgatacatagacacctttagatggcaataca-ccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacacttt 29857925  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  ||| || ||||||||||||| |||||    
T  29857926 ctcttttctcttctcttctctcttcctaatgcat 29857959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 30870058 - 30870142
Alignment:
Q  241 acacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctagt 324  Q
    ||||||| | |||||||||||||||||| |  |||||||  ||| ||||||||||||||||| |||||| ||||||||| |||||    
T  30870058 acacccatataaaaatctaacatgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctctctttctagt 30870142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 4231564 - 4231674
Alignment:
Q  212 acatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttt 310  Q
    ||||| ||||||||||| |||||| |||| ||||||||||||||||| ||| ||||  || |||| ||| ||| || ||| |||||||||| ||| || |    
T  4231564 acatcattaggtggcaatacaccc-cttgccacccacacaaaaatctgacacgtggccatatggaccccgcacaagtacactttctctttcttcttctct 4231662  T
Q  311 tctctcttccta 322  Q
    ||||||||||||    
T  4231663 tctctcttccta 4231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 51898783 - 51898651
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 51898685  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    || |||| |||||| |||||||||||||||||||    
T  51898684 ctatttcctctcctcttctctcttcctagtgcat 51898651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 9474976 - 9474836
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| | |||| |||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacacttt 9474878  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||||||| ||||| |||||||    
T  9474877 ctcttttctctcctcttctctcttcctaatgcatgggatgta 9474836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 47452420 - 47452288
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacacttt 47452322  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  47452321 ctcttttctctcctcttctctcttcctattgcat 47452288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 27564835 - 27564703
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||| ||| ||||||||||||||||||||| ||| ||  | | ||||| ||| ||| |||||| |||    
T  27564835 gagtaatgatacatagacatccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacacttt 27564737  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  27564736 ctcttttctctcctcttctctcttcctaatgcat 27564703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 37649198 - 37649330
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||| ||| ||||| | ||| |  || ||| |||||| |||    
T  37649198 gagtaatgatacatagacatctttaggtggcaatacactct-ttgacacccacacaaaaatctgacacgtggtcacgtgaattccgcacaagcacacttt 37649296  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    | ||||  |||||| ||||||||||||| |||||    
T  37649297 cccttttctctcctcttctctcttcctaatgcat 37649330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 44453984 - 44454111
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 299  Q
    ||||||||| |||| ||||| ||||||| ||| | |||||| |||||||||||||||| ||||||||| | ||||| ||||||| |||||| ||| ||||    
T  44453984 atgatacatagacacctttaagtggcaatacatc-tcttgatacccacacaaaaatctgacatgtggttacgtggatcccacacaagcacactttttctt 44454082  T
Q  300 tcatctccttttctctcttcctagtgcat 328  Q
    || |||| | ||||||||||||| |||||    
T  44454083 tcctctcatcttctctcttcctaatgcat 44454111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 2581915 - 2582041
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  2581915 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 2582013  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    || |||  |||||| |||||||||||||    
T  2582014 cttttttctctcctcttctctcttccta 2582041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 32813247 - 32813373
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||| |  |||| ||| ||| |||||| |||    
T  32813247 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacacttt 32813345  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||||| |||||||||||||    
T  32813346 ctcttttctctcctcttctctcttccta 32813373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 328
Target Start/End: Complemental strand, 44548473 - 44548344
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 297  Q
    ||||||||||| |||||||||||||||||| ||||| | |||| |||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  44548473 taatgatacatagacatctttaggtggcaatacaccat-ttgatacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 44548375  T
Q  298 tttcatctccttttctctcttcctagtgcat 328  Q
    |||  |||| | ||||||||||||| |||||    
T  44548374 ttttctctcttcttctctcttcctaatgcat 44548344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 5959100 - 5958974
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||| ||||||| ||||| ||||||||||||||||||||||| ||||||||| || |||| ||| ||| || ||| |||    
T  5959100 gagttatgatacataaacacccttaagtggcaatacacc-tcttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacacttt 5959002  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  5959001 ctctttcttcttctcttctctcttccta 5958974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 38595154 - 38595280
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    ||||||||||||||  ||| ||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| |||  || |||||| |||    
T  38595154 gagtaatgatacataaacacctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacacttt 38595252  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||| | |||||||||||||    
T  38595253 ctcttttctctcatcttctctcttccta 38595280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 50591100 - 50590974
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 50591002  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  50591001 ctctttcttcttctcttctctcttccta 50590974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 8346488 - 8346355
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| | || ||||||||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  8346488 gagtaatgatacatagtcacctttaggtggcaatacaccat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcacacttt 8346390  T
Q  295 ctctttcatctcct-tttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||| |||||||||| |||||    
T  8346389 ctcttttctctcctctttttctcttcctaatgcat 8346355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 41608593 - 41608453
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||||| ||||||||||| |||||| |||||||| ||||||||||||| ||||||||  || |||| |||  || || ||| |||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacactcacacaaaaatctgacatgtggccatatggaccccgtacaagtacacttt 41608495  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||| ||| || ||||||||||||| | |||||| ||||    
T  41608494 ctctttcttcttctcttctctcttcctaatacatagggtgta 41608453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 50630458 - 50630598
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| || | | ||||||||||| ||| ||| |||  |||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  50630458 gagtaatgatacatagatacccttaggtggcaatacatcct-ttgttacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 50630556  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||||||| |||||||| ||||    
T  50630557 ctcttttctctcctcttctctcttcctaatgcatagggtgta 50630598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 3000318 - 3000445
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattt 293  Q
    |||||||||||||||  ||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| |||  || |||||| ||    
T  3000318 cgagtaatgatacataaacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactt 3000416  T
Q  294 tctctttcatctccttttctctcttccta 322  Q
    |||||||  |||| | |||||||||||||    
T  3000417 tctcttttctctcatcttctctcttccta 3000445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 13414802 - 13414893
Alignment:
Q  238 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||||||||||||||||||||| || || | ||||| ||||||| ||||||||||||||||  | || | ||||||||||||| |||||    
T  13414802 ttgacacccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacattttctcttttctatcatcttctctcttcctaatgcat 13414893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 6260870 - 6260998
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||| || || ||| |||||||| || |||||| ||  ||||||||| |||||||||||||||||| | ||||| ||| ||  ||||||||||    
T  6260870 gagttatgatagatagatatccttaggtggtaatacaccc-ctgaacacccacataaaaatctaacatgtggtcacgtggaccccgcataagcacatttt 6260968  T
Q  295 ctctttcatctccttttctctcttcctagt 324  Q
    || |||| |||||| ||||||||| |||||    
T  6260969 ctatttcttctcctcttctctctttctagt 6260998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 38632421 - 38632289
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| || ||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  38632421 gagtaatgatacatagacacccttaggtggcaataca-ccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38632323  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
     |||||  |||||| ||||||||||||| |||||    
T  38632322 ttcttttctctcctcttctctcttcctaatgcat 38632289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 48716382 - 48716250
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||| | |||||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  48716382 gagtaatgatacatagacacccttaggtggcaatacaccat-ttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 48716284  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
     |||||  | |||| ||||||||||||| |||||    
T  48716283 atcttttctttcctcttctctcttcctaatgcat 48716250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 48489343 - 48489441
Alignment:
Q  240 gacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcataggatgtat 337  Q
    |||| |||||||||||||| ||||||||| | ||||| ||| ||| |||||||||||| |||  || ||| |||||||||||||||  ||||| |||||    
T  48489343 gacatccacacaaaaatctgacatgtggtcacgtggatcccgcacaagcacattttctattttctcacctcttctctcttcctagtatatagggtgtat 48489441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 41758805 - 41758937
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | |||  |||||| ||||||| |||||| |||||||||||||| ||| || || |  |||||||  ||| | |||| |||    
T  41758805 gagtaatgatacatagacaccattaaatggcaatacaccct-ttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaaacacacttt 41758903  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  41758904 ctcttttctctcctcttctctcttcctaatgcat 41758937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 11152476 - 11152346
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttc 295  Q
    |||||||| |||| |||| ||| ||||||||| ||||||| | |||| |||||||||||||| ||| || || |||| |||||  ||| |||||  ||||    
T  11152476 agtaatgaaacatagacacctt-aggtggcaatacaccct-tcgacatccacacaaaaatctgacacgtagtcatgtagaccccgcacaagcacgctttc 11152379  T
Q  296 tctttcatctccttttctctcttcctagtgcat 328  Q
    | |||| |||||| ||||||||||| |||||||    
T  11152378 tttttcctctcctcttctctcttcccagtgcat 11152346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 23597191 - 23597121
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||||||||||||| |||||| ||||||||||| |||| || |||| ||||||| |||||||| ||| ||||    
T  23597191 gagtaatgatacatagacatcattaggtggcaatacactct-ttgatacccacataaaaatctgacacgtgg 23597121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 43132 - 43264
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 294  Q
    |||||||||||||| ||||   ||||| | ||| ||| ||| ||||||||||||||||||||| ||| || || | |||||| || ||| |||||| |||    
T  43132 gagtaatgatacatagacagtcttaggagacaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggactccgcacaagcacacttt 43230  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  ||||||  |||||||| ||| |||||    
T  43231 ctcttttctctcctcctctctctttctaatgcat 43264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 2740274 - 2740414
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 2740372  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||  ||||||||||||| ||||| |||||||    
T  2740373 ctcttttctctccccttctctcttcctaatgcatgggatgta 2740414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 328
Target Start/End: Complemental strand, 18520981 - 18520852
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| ||||||    
T  18520981 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 18520883  T
Q  298 tttcatctccttttctctcttcctagtgcat 328  Q
    ||| ||||||| ||||||||||||| |||||    
T  18520882 ttttatctcctcttctctcttcctaatgcat 18520852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 6679698 - 6679838
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||| |  |||| ||| ||| | ||||||||    
T  6679698 gagttatgatacatagacatctttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacatttt 6679796  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||||||| || ||||| ||||    
T  6679797 ctcttttctctcctcttctctcttcctaatgtatagggtgta 6679838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 35943992 - 35943860
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcat-ttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacacttt 35943894  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||| |||||| || ||||||||||||||||    
T  35943893 ctctttcctctcctcttttctcttcctagtgcat 35943860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 2252268 - 2252142
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  2252268 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 2252170  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  2252169 ctctttcttcttctcttctctcttccta 2252142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 33149738 - 33149606
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||| | ||| || || | ||||| ||| ||| |||||| |||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacacttt 33149640  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  33149639 ctcttttctctcctcttctctcttcctaatgcat 33149606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 33825424 - 33825292
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||| ||| |||||  ||||||||||| |||| | ||||||||||||| |||||||| ||| ||| | ||||| |||  |||| |||||| |||    
T  33825424 gagtaatgatgcatagacattcttaggtggcaatacactc-cttgacacccacataaaaatctgacacgtgttcatgtgaaccttacacaagcacacttt 33825326  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||| |||| || |||||||||||||||||||    
T  33825325 ctcttttatcttctcttctctcttcctagtgcat 33825292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 36733042 - 36732910
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||||||| |||  | || | ||||||||  ||| |||||| |||    
T  36733042 gagtaatgatacatagacacccttaggtagcaatacaccct-ttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacacttt 36732944  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  36732943 ctcttttctctcctcttctctcttcctaatgcat 36732910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 322
Target Start/End: Complemental strand, 3921370 - 3921239
Alignment:
Q  191 acaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcac 289  Q
    |||| |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||    
T  3921370 acaaagagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtac 3921272  T
Q  290 attttctctttcatctccttttctctcttccta 322  Q
    | |||||||||| ||| || |||||||||||||    
T  3921271 actttctctttcttcttctcttctctcttccta 3921239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 327
Target Start/End: Original strand, 40145407 - 40145538
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| || ||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  40145407 gagtaatgatacatagacacccttaggtggcaatacaccct-ttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 40145505  T
Q  295 ctctttcatctccttttctctcttcctagtgca 327  Q
    ||||||  |||||| ||||||||||||| ||||    
T  40145506 ctcttttctctcctcttctctcttcctaatgca 40145538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 2177445 - 2177504
Alignment:
Q  277 cccacacgagcacattttctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  2177445 cccacacaagcacattttctctttcctctcctcttctctcttcctagtgcattggatgta 2177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 28177775 - 28177901
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| ||||| |  |||| ||| ||| | |||| |||    
T  28177775 gagttatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacacttt 28177873  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  |||||| ||| |||||||||    
T  28177874 ctcttttctctcctcttccctcttccta 28177901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 42414402 - 42414276
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| |  |||||||||| ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  42414402 gagtaatgatacatagacaccagtaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 42414304  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
     |||||  | |||| |||||||||||||    
T  42414303 atcttttctttcctcttctctcttccta 42414276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 13811652 - 13811792
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||| ||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  13811652 gagtaaagatacatagacacccttaggtggcaatacatcat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 13811750  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    |||||   |||||| ||||||||||||| ||||| |||||||    
T  13811751 ctcttctctctcctcttctctcttcctaatgcatgggatgta 13811792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 14831814 - 14831946
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| ||||   ||||||||||| ||||||| |||||||||||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 14831912  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    || |||  |||||| ||||||||||||| |||||    
T  14831913 cttttttttctcctcttctctcttcctaatgcat 14831946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 35785199 - 35785331
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| |||    
T  35785199 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagttacgtggatcccgcacaatcacacttt 35785297  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||| | ||||||||||||| |||||    
T  35785298 ctcttttctctcatcttctctcttcctaatgcat 35785331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 36875702 - 36875644
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaat 256  Q
    ||||||||||||| |||| | ||||||||||| ||||||| |||||||||||||||||||    
T  36875702 agtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaat 36875644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 6260101 - 6259980
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    ||||||||||||||  ||| |  |||||| ||| ||||||| || |||||||| |||||||||||||  |||| |  |||||| ||||  |||||| |||    
T  6260101 gagtaatgatacatacacaaccataggtgacaatacaccct-ttaacacccacgcaaaaatctaacacatggtcacatggacctcacagaagcacacttt 6260003  T
Q  295 ctctttcatctccttttctctct 317  Q
    |||||||||||||| ||||||||    
T  6260002 ctctttcatctcctcttctctct 6259980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 10356639 - 10356696
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    ||||||||| |||||| ||||||||||| ||| ||  |||||||||||||||||||||    
T  10356639 atgatacatagacatccttaggtggcaatacatcccattgacacccacacaaaaatct 10356696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 21370048 - 21370132
Alignment:
Q  241 acacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctagt 324  Q
    |||||||| ||||||||| ||||||||| | ||||||||  ||| | ||||||||||||||| |||| | |||| ||||||||||    
T  21370048 acacccactcaaaaatctgacatgtggtcacgtggaccccgcacaaacacattttctctttcctctcatcttctttcttcctagt 21370132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 31009032 - 31009120
Alignment:
Q  241 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||| |||| ||| || |||||||||||||||||||    
T  31009032 acacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctcttctcttctctcttcctagtgcat 31009120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 25831334 - 25831397
Alignment:
Q  246 cacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctcct 308  Q
    |||| |||||||||||| ||||| ||||||| ||||||| | ||||||||||||||||| ||||    
T  25831334 cacaaaaaaatctaacacgtggtcatgtggaccccacacaaacacattttctctttcatatcct 25831397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 26720516 - 26720642
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || ||||| ||| |||||||| ||| ||||  |  |||| ||| ||| |||||| |||    
T  26720516 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacacttt 26720614  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  ||| || |||||||||||||    
T  26720615 ctcttttctcttctcttctctcttccta 26720642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 26990265 - 26990391
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || ||||| ||| |||||||| ||| ||||  |  |||| ||| ||| |||||| |||    
T  26990265 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacacttt 26990363  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  ||| || |||||||||||||    
T  26990364 ctcttttctcttctcttctctcttccta 26990391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 18207180 - 18207313
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||||||| ||||| |||||||||||| |||||||||||||| ||||  | ||| | ||||||| |||||| |||    
T  18207180 gagttatgatacatagacaaccttaggtggcaatacacc-tcttgacacccatacaaaaatctaacacgtgg-cacgtgaaccccacacaagcacacttt 18207277  T
Q  295 ctctttcatctccttttctctcttcctagtgcatag 330  Q
    |||||||||||||| |||||||||||||||| ||||    
T  18207278 ctctttcatctcctcttctctcttcctagtggatag 18207313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 35137533 - 35137673
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    ||||||||||| || |||| | ||||||||||| ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| | |||| |||    
T  35137533 gagtaatgataaatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacacacttt 35137631  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||||||| ||||| |||||||    
T  35137632 ctcttttctctcctcttctctcttcctaatgcatgggatgta 35137673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 36208214 - 36208305
Alignment:
Q  238 ttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||||||||||||| || ||||||||| | ||||||||  ||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  36208214 ttgacacccacacaaaaagctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctcctcttctctcttcctagtgcat 36208305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 19329842 - 19329974
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||| ||| ||||||||||||||||||||| ||| ||  | | ||||| ||| ||| |||||| |||    
T  19329842 gagtaatgatacatagacatccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacacttt 19329940  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  19329941 ctcttttctctcctcttctctcttcctaatgcat 19329974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 38267040 - 38267180
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | ||| ||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  38267040 gagtaatgatacatagacacccttatgtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38267138  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||||||| ||||| |||||||    
T  38267139 ctcttttctctcctcttctctcttcctaatgcatgggatgta 38267180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 41423682 - 41423814
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| |||| ||| || ||||| |||||||||  |||||||||||| ||||||||| | || || |||  || |||| |||||    
T  41423682 gagttatgatacatagacatcattagatggtaatacacc-tcttgacacttacacaaaaatctgacatgtggtcacgtagatcccgtacaagcatatttt 41423780  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||||||||||| |||||||||||||||||||    
T  41423781 ctctttcatctcctcttctctcttcctagtgcat 41423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 8080483 - 8080351
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||| ||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  8080483 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 8080385  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||||| ||||||||||||| |||||    
T  8080384 ctcttttctctcctcttctctcttcctattgcat 8080351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 38837217 - 38837357
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| |||||||  | ||||| |||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  38837217 gagtaatgatacatagacacccttaggtggcaatacacccttgt-acacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38837315  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||||||| ||||| |||||||    
T  38837316 ctcttttctctcctcttctctcttcctaatgcatgggatgta 38837357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 7389389 - 7389515
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| |||| || ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  7389389 gagtaatgatacatagacacccttaggtggcaatacactct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 7389487  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||  ||||||  ||||||||||||    
T  7389488 ctcttttctctcctactctctcttccta 7389515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 27744368 - 27744269
Alignment:
Q  238 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    |||| |||||||||||||||| ||||||||  | ||||| ||| ||  |||||||||||||| || |||||| ||||||||||||||||||| |||||||    
T  27744368 ttgatacccacacaaaaatctgacatgtggccacgtggatccctcataagcacattttctctatcctctcctcttctctcttcctagtgcatgggatgta 27744269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 40846213 - 40846087
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||| || || |||| ||| ||| |  ||| |||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacatccacacaaaaatctaacatgtagttatatggaccccgcacaaatacacttt 40846115  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  40846114 ctctttcttcttctcttctctcttccta 40846087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 328
Target Start/End: Original strand, 3783998 - 3784127
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  3783998 taatgatacatagacacccttaggtggcaatacatctt-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctc 3784096  T
Q  298 tttcatctccttttctctcttcctagtgcat 328  Q
    |||  |||||| ||||||||||||| |||||    
T  3784097 ttttctctcctcttctctcttcctaatgcat 3784127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 337
Target Start/End: Complemental strand, 35468955 - 35468814
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||||| |||| |||||| ||| | | |||||||||||| |||||||||| |||||   ||||||||||  ||| | |||| |||    
T  35468955 gagtaatgatacatagacatccttagatggcaatacatcat-ttgacacccacataaaaatctaatatgtgaccatgtggaccctgcacaaacacacttt 35468857  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgtat 337  Q
    ||||||| | |||| ||||||||||||||| |||  |||||||    
T  35468856 ctctttcctatcctcttctctcttcctagttcatgagatgtat 35468814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 3434562 - 3434666
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||| || ||| || || | ||||| ||| ||| |||||| |||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacacttt 3434660  T
Q  295 ctcttt 300  Q
    ||||||    
T  3434661 ctcttt 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 4999614 - 4999482
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 294  Q
    |||||||||||||| |||| | |||| |||||| ||||| | ||||||||||||||||||||| | | || || | ||||||||  ||| | |||| |||    
T  4999614 gagtaatgatacatagacacccttagatggcaatacacctt-ttgacacccacacaaaaatctgatacgtagtcacgtggaccccgcacaaacacacttt 4999516  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    |||||| ||||||| ||||||||||||| |||||    
T  4999515 ctcttttatctcctcttctctcttcctaatgcat 4999482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 36362013 - 36361909
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  36362013 gagtaatgatacatagacacccttaggtggcaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 36361915  T
Q  295 ctcttt 300  Q
    ||||||    
T  36361914 ctcttt 36361909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 8238236 - 8238339
Alignment:
Q  219 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctct 317  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||| || || |||| ||| ||| || ||| |||||||||| ||| || ||||||||    
T  8238236 taggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtagtcatatggaccccgcacaagtacactttctctttcttcttctcttctctct 8238334  T
Q  318 tccta 322  Q
    |||||    
T  8238335 tccta 8238339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 2318320 - 2318222
Alignment:
Q  219 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctct 317  Q
    |||||||||| ||||| ||||||||||||||||||||||| || |||||| | |||||||| |||  |||| | ||||||||||||||| | ||||||||    
T  2318320 taggtggcaagacacc-tcttgacacccacacaaaaatctgacgtgtggtcacgtggacccgacataagcatactttctctttcatctcatcttctctct 2318222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 22343361 - 22343487
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| |||||||   || |||| ||| ||| || ||| |||    
T  22343361 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacacttt 22343459  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  22343460 ctctttcttcttctcttctctcttccta 22343487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 32564526 - 32564400
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||||  ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| |  ||| |||    
T  32564526 gagttatgatacataaacattcttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggctatatggaccccgcacaaatacacttt 32564428  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  32564427 ctctttcttcttctcttctctcttccta 32564400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 41915741 - 41915867
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| ||||||||| |||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  41915741 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacctacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 41915839  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || |||||||||||||    
T  41915840 ctctttcttcttctcttctctcttccta 41915867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 16374884 - 16374798
Alignment:
Q  237 cttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacattttctctttcatctccttttctctcttccta 322  Q
    ||||||| |||||||||||||| ||| ||||| | ||||| | ||||| ||||||  |||||||||||||| |||||||||||||||    
T  16374884 cttgacatccacacaaaaatctgacacgtggtcacgtggatctcacacaagcacacattctctttcatctctttttctctcttccta 16374798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 46374913 - 46374832
Alignment:
Q  185 actttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||||||  |||||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||    
T  46374913 actttaatgacgagttatgatacatagacatccttaggtggcaacacaccct-ttaacacccacacaaaaatctgacacgtgg 46374832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 19436287 - 19436155
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||| ||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||  |||||| |||    
T  19436287 gagtaatgatacatagacatccttaggtgacaataca-ccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacacttt 19436189  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  ||| || || |||||||||| |||||    
T  19436188 ctcttttctcttctcttttctcttcctaatgcat 19436155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 36362026 - 36362130
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  36362026 gagtaatgatacatagacacccttaggtggtaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 36362124  T
Q  295 ctcttt 300  Q
    ||||||    
T  36362125 ctcttt 36362130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 320
Target Start/End: Complemental strand, 39256023 - 39255900
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||||||| |||||  ||||| ||||| |||||||||| ||| |||| |  |||||| |||||| || ||| |||    
T  39256023 gagttatgatacatagacaaccttaggtggcaatacacca-cttgatacccatacaaaaatctgacacgtggcac-gtggactccacacaagaacacttt 39255926  T
Q  295 ctctttcatctccttttctctcttcc 320  Q
    |||||||||||||| |||||||||||    
T  39255925 ctctttcatctcctcttctctcttcc 39255900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 35522881 - 35523002
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 299  Q
    ||||||||| |||||| ||| ||||||| ||||| | || |||||||||||||||||| ||| ||||  || |||| ||| ||| |||||| ||||||||    
T  35522881 atgatacatagacatccttaagtggcaatacaccat-ttaacacccacacaaaaatctgacacgtggccatatggatcccgcacaagcacactttctctt 35522979  T
Q  300 tcatctccttttctctcttccta 322  Q
    |  |||| | |||||||||||||    
T  35522980 ttctctcttcttctctcttccta 35523002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 40957707 - 40957839
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| ||||   ||||||||||| |||| || |||| |||||||||||||||| ||| || || | ||||| |||  || |||||| |||    
T  40957707 gagtaatgatacatagacactcttaggtggcaatacactct-ttgatacccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcacacttt 40957805  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  |||| | ||||||||||||| |||||    
T  40957806 ctcttttctctcatcttctctcttcctaatgcat 40957839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 3694411 - 3694491
Alignment:
Q  241 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcc 320  Q
    |||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||||||||  |||||| |||||||||||    
T  3694411 acacccacacaaaaatctgacacgtagtcatgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcc 3694491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 10343672 - 10343602
Alignment:
Q  187 tttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||| ||| |||||||||||||| |||| | |||||||| || ||||  |||||||||||||||||||||||    
T  10343672 tttaccaaagagtaatgatacatagacacccttaggtggaaatacaca-tcttgacacccacacaaaaatct 10343602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 38044197 - 38044323
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| |||||||||  ||| | ||||||||||| |||||| ||||||| |||||||||||||| |||||| |  || |||| ||| ||| || ||| |||    
T  38044197 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacatccacacaaaaatctgacatgtagccatatggaccccgcacaagtacacttt 38044295  T
Q  295 ctctttcatctccttttctctcttccta 322  Q
    ||||||| ||| || || ||||||||||    
T  38044296 ctctttcttcttctcttttctcttccta 38044323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 32951545 - 32951467
Alignment:
Q  245 ccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttccta 322  Q
    |||||||||||||||||| || || | ||||||||  ||| |||||| |||||||||  |||||| |||||||||||||    
T  32951545 ccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctctcttccta 32951467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 1029 - 897
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||||||||||||||| ||||||| || ||| ||||||||||| || ||| || || | ||| | ||| ||| |||||| |||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct-ttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacacttt 931  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||| |||||| |||||||||||||||||||    
T  930 ctctttcctctcctcttctctcttcctagtgcat 897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 1029 - 897
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||||||||||||||| ||||||| || ||| ||||||||||| || ||| || || | ||| | ||| ||| |||||| |||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct-ttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacacttt 931  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||| |||||| |||||||||||||||||||    
T  930 ctctttcctctcctcttctctcttcctagtgcat 897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 10209 - 10069
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||| ||||||||| |||| ||||||||||||| ||| ||| |||||| ||||| |||||||| ||| || || | ||||||| |  || |||||| |||    
T  10209 gagttatgatacatagacacctttaggtggcaatacatcct-ttgacatccacataaaaatctgacacgtagtcacgtggaccgcgtacaagcacacttt 10111  T
Q  295 ctctttcatctccttttctctcttcctagtgcataggatgta 336  Q
    ||||||  |||||| ||||||||||||| |||||||| ||||    
T  10110 ctcttttctctcctcttctctcttcctaatgcatagggtgta 10069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 4029 - 4161
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| |||||| |||||| ||| ||| || |||||||||||||||||| ||| || || | ||||| ||| ||  |||||| |||    
T  4029 gagtaatgatacatagacacctttagatggcaataca-ccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacacttt 4127  T
Q  295 ctctttcatctccttttctctcttcctagtgcat 328  Q
    ||||||  ||| || ||||||||||||| |||||    
T  4128 ctcttttctcttctcttctctcttcctaatgcat 4161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 336
Target Start/End: Original strand, 152523 - 152638
Alignment:
Q  221 ggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttc 319  Q
    |||||||| |||||| |||||||||||||||||||||| ||||||||| || |||| ||| ||| |  ||| |||||||||| ||| || |||||||||     
T  152523 ggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggtcatatggatcccgcacaaatacactttctctttcttcttctcttctctcttt 152621  T
Q  320 ctagtgcataggatgta 336  Q
    ||| | ||| |||||||    
T  152622 ctaatacatgggatgta 152638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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