View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_26 (Length: 357)
Name: NF11470_low_26
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 43163996 - 43164344
Alignment:
| Q |
1 |
ttagtttgttttaatttgttatgaagacacatgtatatctgttatgaagaatatttaaaacatgataaaataattaatagtcgtttatgataatttagtc |
100 |
Q |
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| T |
43163996 |
ttagtttgttttaatttgttatgaagacacatgtatatctgttatgaagaatatttaaaacatgagaaaataactaatagtcgttgatgataatttagtc |
43164095 |
T |
|
| Q |
101 |
aatgcattagaaacctaaaaacaaaatgtaaagggtttgaaaattagacaacaagctatttgtgagtgactgaaaggttgccattaactgtttttgaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164096 |
aatgcattagaaacctaaaaacaaaatgtaaagggtttgaaaattagacaactggctatttgtgagtgactgaaaggttgccattaactgtttttgaggt |
43164195 |
T |
|
| Q |
201 |
cactcttgtgaaggatagaaatcttcatgtcgaattcgaggtcattcaacacacaaatgacattcagcgatcgaagagtagagatcattctgcccgtgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43164196 |
cactcttgtgaaggatagaaatcttcatgtcgaattcgaggtcattcaacacacaaatgacattcagcgatcgaagagcagagatcattctgcccgtgtg |
43164295 |
T |
|
| Q |
301 |
agtccagatcagcttttaagtgtgtgttgtactgctatacatctctgct |
349 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
43164296 |
agtccagatcagcttttgagtgtgtgttgtactgctatacgtctctgct |
43164344 |
T |
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