View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_29 (Length: 329)
Name: NF11470_low_29
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_29 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 35903946 - 35904257
Alignment:
| Q |
18 |
atcatcagcctaagagtttttgtcatcatcatcgccctttcgggttgacaatttgagagaaaatggcagcagaattctcagttgagtcatgatgactaag |
117 |
Q |
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| T |
35903946 |
atcatcagcctaagagtttttgtcatcatcatcgccctttcgggttgacaatttgagagaaaatggcagcagaattctcagttgagtcatgatgactaag |
35904045 |
T |
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| Q |
118 |
gtcatgctcacttccaaggctaaggtttttgtaatgtgctgccatttcattattgtgcgacaaattcacctcttcaaattcactctcatttaaatgtgac |
217 |
Q |
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| T |
35904046 |
gtcatgctcacttccaaggctaaggtttttgtaatgtgctgccatttcattattgtgtgacaaattcacctcttcaaattcactctcatttaaatgtgac |
35904145 |
T |
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| Q |
218 |
gtgttcttatgagttgaaccatcaggattttcttgaaggttgagagcaaattcaagattccacaacagatcattcatggagggacgatcaagtccatgat |
317 |
Q |
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| T |
35904146 |
gtgttcttatgagttgaaccatcaggattttcttgaaggttgagagcaaattcaagattccacaacagatcattcatggagggacgatcaagtccatgat |
35904245 |
T |
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| Q |
318 |
cagacagacact |
329 |
Q |
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| T |
35904246 |
cagacagacact |
35904257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 227 - 329
Target Start/End: Complemental strand, 47625088 - 47624986
Alignment:
| Q |
227 |
tgagttgaaccatcaggattttcttgaaggttgagagcaaattcaagattccacaacagatcattcatggagggacgatcaagtccatgatcagacagac |
326 |
Q |
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| T |
47625088 |
tgagttgaaccatccttgttttcttgcaggttgagtgcaaattctagattccacaacagatcattcatggagggacggtcagctccgtgatccgacaaac |
47624989 |
T |
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| Q |
327 |
act |
329 |
Q |
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| T |
47624988 |
act |
47624986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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