View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_3 (Length: 770)
Name: NF11470_low_3
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_3 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 664; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 15 - 759
Target Start/End: Complemental strand, 5711442 - 5710701
Alignment:
| Q |
15 |
agtatgatatcagtaacaaaaataagattttaatagagtcaataatgattttggtcttcgaatgcgtcacgcgctgcctgtcactacagtccttgaatgt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5711442 |
agtatgatatcagtaacaaaaataagattttaatagagtcaataatgattttggtcttcgaatgcgtcaagcgctgcctgtcactacagtccttgaatgt |
5711343 |
T |
|
| Q |
115 |
atcaaaattacaaaaacaaccctgaaacctgaatgtgtgnnnnnnnaagtgagtttgatttttcgattgtgtctttccttagtttgtttggtccttaaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5711342 |
atcaaaattacaaaaacaaccctgaaacctgaatgtgtgtttttttaagtgagtttgatttttcgattgtgtctttccttagtttgtttggtccttaaat |
5711243 |
T |
|
| Q |
215 |
gtgttttccgttagtcagtttagtctatgaaaatactaacaaaagtcacactcatggatgtttttgcaatttcaattcattcaaaggctataatgacacc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5711242 |
gtgttttccgttagtcagtttagtctatgaaaatactaacaaaagtcacactcatggatgtttttgcaatttcaattcattcaaaggctataatgacacc |
5711143 |
T |
|
| Q |
315 |
gccttacacatttaaggactaaaatgacgatttattcattttaactttagagtaatgatgaatcatgcaatctaaatagtacatcatcaaaggatgaggt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5711142 |
gccttacacatttaaggactaaaatgacgatttattcattttaactttagagtaatgatgaatcatgcaatctaaatagtacatcatcaaaggatgaggt |
5711043 |
T |
|
| Q |
415 |
tacagaggagataaaatagaaagagacatctagcaataaaacaataccttctatggccttcaacaaccttagccatgtttccatcatatgttggaacaaa |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5711042 |
tacagaggagataaaatagaaagagacatctagcaataaaacaataccttctatggccttcaacaaccttagccatgtttccatcatatgttggaacaaa |
5710943 |
T |
|
| Q |
515 |
tatatcactctctagagacacaaggtaatccaatgcagccatttgtgacgagtggttttggaaatacatcaaatctgaaggttccagcagagtttccttc |
614 |
Q |
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| T |
5710942 |
tatatcactctctagagacacaaggtaatccaacgcagccatttgtgatgagtggttttggaaatacatcaaatctgaaggttccagcagagtttccttc |
5710843 |
T |
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| Q |
615 |
cttacctgtggtagtagcaccagaagnnnnnnnnggttacaaacaaacacgcacaaatagataaacagacagacacatatatgattttgcttctttgtac |
714 |
Q |
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| T |
5710842 |
cttacctgtggtagtagcacaggaa---aaaaaaggttacaaacaaacacacacaaatagataaacagacaggcacatatatgattttgcttctttgtac |
5710746 |
T |
|
| Q |
715 |
cgaccaagttaggataagtagctcgtaaacgtgccattcttctct |
759 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5710745 |
cgaccaagttaggataagtagctcgtaaacgtgccattcttctct |
5710701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 780620 - 780686
Alignment:
| Q |
213 |
atgtgttttccgttagtcagtttagtctatgaaaatactaacaaaagtcacactcatggatgttttt |
279 |
Q |
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| T |
780620 |
atgtgttttccgttcatcagtttggtctgtcaatttactaacaaaagacacactcatggatgttttt |
780686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 10836353 - 10836313
Alignment:
| Q |
92 |
ctgtcactacagtccttgaatgtatcaaaattacaaaaaca |
132 |
Q |
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| T |
10836353 |
ctgtcactatagtccttgaatgtaacaaaattacaaaaaca |
10836313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 578
Target Start/End: Complemental strand, 45807599 - 45807507
Alignment:
| Q |
486 |
gccatgtttccatcatatgttggaacaaatatatcactctctagagacacaaggtaatccaatgcagccatttgtgacgagtggttttggaaa |
578 |
Q |
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||||| |||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| ||||| || || || || ||||||||| |
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| T |
45807599 |
gccatatttccatcatatgtgggaacaaaaatatcactctctaaagacacaagataatccaatgctgccatctgagatgaatgattttggaaa |
45807507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 38358909 - 38358975
Alignment:
| Q |
276 |
ttttgcaatttcaattcattcaaaggctataatgacaccgccttacacatttaaggactaaaatgac |
342 |
Q |
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| T |
38358909 |
ttttgcaattttgattcattcaaggactgtaatgacgccgcctcacacatttaggaactaaaatgac |
38358975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 577
Target Start/End: Original strand, 24494434 - 24494540
Alignment:
| Q |
471 |
ccttcaacaaccttagccatgtttccatcatatgttggaacaaatatatcactctctagagacacaaggtaatccaatgcagccatttgtgacgagtggt |
570 |
Q |
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|||||||| || || ||||| |||||||||||||| |||||||| ||||||||||||| || ||||| ||||||||||| |||||||| || || || | |
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| T |
24494434 |
ccttcaactactttggccatatttccatcatatgtaggaacaaagatatcactctctaatgagacaagataatccaatgctgccatttgagaggaatgat |
24494533 |
T |
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| Q |
571 |
tttggaa |
577 |
Q |
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| T |
24494534 |
tttggaa |
24494540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 11603571 - 11603507
Alignment:
| Q |
224 |
gttagtcagtttagtctatgaaaatactaacaaaagtcacactcatggatgtttttgcaatttca |
288 |
Q |
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| T |
11603571 |
gttagtcagtttagtccatgatattactagcaaaagacacactcatggatatttttgtaatttca |
11603507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 808 - 708
Alignment:
| Q |
206 |
tccttaaatgtgttttccgttagtcagtttagtctatgaaaatactaacaaaagtcacactcatggatgtttttgcaatttcaattcattcaaaggctat |
305 |
Q |
| |
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||||| ||||| | |||||||||||| ||| ||| | ||| |||||||||||| |||||| | ||| |||||||||||| ||| ||||||||| |||| |
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| T |
808 |
tccttgaatgtatcttccgttagtcaatttggtccacaaaattactaacaaaagacacacttagagatatttttgcaattttaatacattcaaagactat |
709 |
T |
|
| Q |
306 |
a |
306 |
Q |
| |
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| |
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|
| T |
708 |
a |
708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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