View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_32 (Length: 318)
Name: NF11470_low_32
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 31951684 - 31951393
Alignment:
| Q |
9 |
agcacagatatacaagaaagtgacatcggtaaattcacgttctggtttagatctcatgatatcagtaaaatttgatgtttgattaagtaacatttctgtt |
108 |
Q |
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| T |
31951684 |
agcacagatatacaagaaagtgacatcggtaaattcacgttctggtttagatctcatgatatcagtaaaatttgatgtttgattaagtaacatttctgtt |
31951585 |
T |
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| Q |
109 |
ttaggggaagctaccaatgtcatttttccgcattgaagatggggaagcgcggagattcattggaaaatgtttagaacctgcggcaaatagaccgtcagcg |
208 |
Q |
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| T |
31951584 |
ttaggggaagctaccaatgtcatttttccgcattgaagatggggaagcgcggagattcattggaaaatgtttagaacctgcggcaaatagaccgtcagcg |
31951485 |
T |
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| Q |
209 |
aaagatttgttgcttgaaccttttctttcgacggatgatacatcatcagcaataaagttaaaaattcagaagccgtttttgaatgaaaatga |
300 |
Q |
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| T |
31951484 |
aaagatttgttgcttgaaccttttctttcgacagatgatacatcatcagcaatgaagttaaaaattcagaagccgtttttgaatgaaaatga |
31951393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 5951546 - 5951513
Alignment:
| Q |
10 |
gcacagatatacaagaaagtgacatcggtaaatt |
43 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
5951546 |
gcacaaatatacaagaaagtgacatcggtaaatt |
5951513 |
T |
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