View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_34 (Length: 310)
Name: NF11470_low_34
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 292
Target Start/End: Complemental strand, 43163905 - 43163635
Alignment:
| Q |
24 |
cattgggaagtatctcactgta--gtgatccttcttattttaatccacccatgttttcctacaaacgcaagatctaacaattgttaatagttcatgcatc |
121 |
Q |
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| T |
43163905 |
cattgggaagtatctcactatatagtgatccttcttattttaatccacccatgttttcctacaaacgcaagatctaacaattgttaatagttcatgcatc |
43163806 |
T |
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| Q |
122 |
tacgtgatgtttttgttcgctacatacaacaacaagcgttccaatatcattcaccggaaatccagaatgtatgttttagtagcaaaaacaattacaggac |
221 |
Q |
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| T |
43163805 |
taagtgatgtttttgttcgctacatacaacaacaatcgttccattatcattcactggaaatccagaatgtatgttttagtagcaaaaacaattacaggac |
43163706 |
T |
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| Q |
222 |
atcaaatgaacatctcccacatttcgcaaaacatgatgcaacaaggaaatgcaactcagcatataatgttc |
292 |
Q |
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| T |
43163705 |
atcaaatgaacatctcccacatttcgcaaaacatgatgcaacaaggaaatgcaactcagcatataatgttc |
43163635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 51466770 - 51466647
Alignment:
| Q |
54 |
tcttattttaatccacccatgttttcctacaaacgcaagatctaacaattg-ttaatagttcatgcatctacgtgatgtttttgttcgctacatacaaca |
152 |
Q |
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||||||||| |||||||||||||||||| |||| |||||||||||| |||| || ||||| | ||||| |||||| ||||||||| | ||||| | || |
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| T |
51466770 |
tcttatttttatccacccatgttttcctccaaatgcaagatctaactattgcctattagttagttcatcttcgtgatatttttgttcaccacatatagca |
51466671 |
T |
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| Q |
153 |
acaagcgttccaatatcattcacc |
176 |
Q |
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||| |||||||||| ||||||| |
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| T |
51466670 |
acacttgttccaatataattcacc |
51466647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 51464662 - 51464610
Alignment:
| Q |
216 |
caggacatcaaatgaacatctcccacatttcgcaaaacatgatgcaacaagga |
268 |
Q |
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||||||||||||||||||| ||||||||| | |||||||| ||||||||||| |
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| T |
51464662 |
caggacatcaaatgaacatttcccacattatgtaaaacatgctgcaacaagga |
51464610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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