View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_35 (Length: 299)
Name: NF11470_low_35
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 44115273 - 44115571
Alignment:
| Q |
12 |
aagaaccatatgtatcagtttccagttcaacaagatgtgttcaacagagaaagcaccaaactgaataaaaacagaactacacaaactact--aattcatc |
109 |
Q |
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| T |
44115273 |
aagaaccatatgtatcagtttccagttcaacaagatgtgttcaacagagaaagcaccaaactgaataaaaacagaactacacaaactactctaattcatc |
44115372 |
T |
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| Q |
110 |
tagcag---------atacctagacagtgattcaattagcgaaagggcagaaccattgtagtcttgcggcaaacgttcaagctgcaataataaacggtta |
200 |
Q |
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| T |
44115373 |
tagcagctgtatcaaatacctagacagtgattcaattagcgaaagggcagaaccattgtagtcttgcggcaaacgttcaagctgcaataataaacggtta |
44115472 |
T |
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| Q |
201 |
cttttacagttctctgactaacgttcttcttacgttcttgaatatatgtcattaattatttaccttcaaatttcccagctcgcttagggaatcggtgaa |
299 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44115473 |
cttttacagttctctaactaactttcttcttacgttcttgaatatatgtcattaattatttaccttcaaatttcccagctcgcttagggaatcggtgaa |
44115571 |
T |
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