View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11470_low_36 (Length: 296)
Name: NF11470_low_36
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 2082757 - 2083032
Alignment:
| Q |
16 |
catctgcaagaaccaggtacgcaaaagtcttaacagtttctacaattgcgcatcatatggatacgtatctgcaaatattagacagtgtatcagaattaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2082757 |
catctgcaagaaccaggtacgcaaaagtcttaacagtttctacaattgcgcatcatatggatacgtatctgcaaatattagacagtgtatcagaattaaa |
2082856 |
T |
|
| Q |
116 |
gacagcagtgtcacaaacattattatagtactacaggatacaaaagatgaacactttgtgagctttttgaccttttggcaacacgaaaaggaagccttgc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2082857 |
gacagcagtgtcacaaacattattatagtactacaggatacaaaagatgaacactttgtgagctttttgaccttttggcaacacgaaaaggaagccttgc |
2082956 |
T |
|
| Q |
216 |
ctaccagctgaatgaaatctgtgaacttcactattacatgtcattgtttcatgcttgcaggaagattcaacaccct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2082957 |
ctaccagctgaatgaaatctgtgaacttcactattacatgtcattgtttcatgcttgcaggaagattcaacaccct |
2083032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University