View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_37 (Length: 295)
Name: NF11470_low_37
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 43316109 - 43315815
Alignment:
| Q |
1 |
cgctccactagttgaagtacttaaccctagattctaactcaattaattatgaagatggagagtacgatatattatgcttttatagttttattttatgagc |
100 |
Q |
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| T |
43316109 |
cgctccactagttgaagtacttagccctagattctaactcaattaattatgaagatggagagtacgatatattatgcttttataattttattttatgagc |
43316010 |
T |
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| Q |
101 |
caaagttaattactagaatttgcaattggtaatagaaatttagaagaagaacc----------tagnnnnnnnnnttagaagaagaaaaacatgatatgc |
190 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
43316009 |
caaagttaattaccagaatttgcaattggtaatagaaatttagaagaagaacctaaaaaaaaataaaaaaataaattagaagaagaaaaacatgatatgc |
43315910 |
T |
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| Q |
191 |
aaaatat-aataccagtagagatgaggaggtcaacagttttatcatctgccttctctccattaacagcaaagtatctccgtttcaccgtctctct |
284 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43315909 |
aaaatatgaataccagtagagatgaggaggtcaacggttttatcatctgccttctcttcattaacagcaaagtatctccgtttcaccgtctctct |
43315815 |
T |
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