View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_38 (Length: 294)
Name: NF11470_low_38
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_38 |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 31662829 - 31663099
Alignment:
| Q |
1 |
tcctgaaacaccaaacaagttgcgcctagcgcatgggacagaatgcaacaaaaaatttccaacttccaacatgagatttcaagacatatctcgacgtaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31662829 |
tcctgaaacaccaaacaagttgcgcctagcgcatgggacagaatgcaacaaaaaatttccaacttccaatatgagatttcaagacatatctcgacgtaat |
31662928 |
T |
|
| Q |
101 |
gttcgataaaattagcaattgataaatatgaaacaacataaaaacatatttttaattaagataacaagggtaaaattgagataaaaattataatattgaa |
200 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662929 |
gttcgataaaattaatagttgataaatatgaaacaacataaaaacatatttttaattaagataacaagggtaaaattgagataaaaattataatattgaa |
31663028 |
T |
|
| Q |
201 |
cgtagcttattaaaaaatgttacaagtccgtgaaaaaatttgttatcaaagaggtctgttttggtaatacg |
271 |
Q |
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| T |
31663029 |
agtggcttattaaaaaatgttacaagtccgtgaaaaaatttgttatcaaagaggtctgttttggtaatacg |
31663099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 29861452 - 29861408
Alignment:
| Q |
149 |
tttttaattaagataacaagggtaaaattgagataaaaattataa |
193 |
Q |
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| T |
29861452 |
ttttcaattaagattacaagggtaaaattgagagaaaaatgataa |
29861408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 32448143 - 32448181
Alignment:
| Q |
147 |
tatttttaattaagataacaagggtaaaattgagataaa |
185 |
Q |
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| T |
32448143 |
tatttttaattaagataacaagggtaaaattgagataaa |
32448181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 10232549 - 10232510
Alignment:
| Q |
135 |
aacataaaaacatatttttaattaagataacaagggtaaa |
174 |
Q |
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| T |
10232549 |
aacataaaaatatatttttaattaagattacaagggtaaa |
10232510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0495 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 9272 - 9233
Alignment:
| Q |
135 |
aacataaaaacatatttttaattaagataacaagggtaaa |
174 |
Q |
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| T |
9272 |
aacataaaaatatatttttaattaagattacaagggtaaa |
9233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 5657082 - 5657115
Alignment:
| Q |
154 |
aattaagataacaagggtaaaattgagataaaaa |
187 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
5657082 |
aattaagataacaatggtaaaattgagataaaaa |
5657115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 2942038 - 2942002
Alignment:
| Q |
149 |
tttttaattaagataacaagggtaaaattgagataaa |
185 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
2942038 |
ttttcaattaagattacaagggtaaaattgagataaa |
2942002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 6588450 - 6588414
Alignment:
| Q |
149 |
tttttaattaagataacaagggtaaaattgagataaa |
185 |
Q |
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|||||||||||||| ||||| |||||||||||||||| |
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| T |
6588450 |
tttttaattaagattacaagagtaaaattgagataaa |
6588414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 17902770 - 17902730
Alignment:
| Q |
149 |
tttttaattaagataacaagggtaaaattgagataaaaatt |
189 |
Q |
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|||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
17902770 |
ttttaaattaagataacaagggtgaaattgagagaaaaatt |
17902730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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