View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_39 (Length: 271)
Name: NF11470_low_39
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 1591282 - 1591145
Alignment:
| Q |
114 |
tttgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
213 |
Q |
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| T |
1591282 |
tttgctatgactaaggagaagattaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
1591183 |
T |
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| Q |
214 |
cacttgctccacaattttatactcaagaagagttagca |
251 |
Q |
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| T |
1591182 |
cacttgctccacaattttatactcaagaagagttagca |
1591145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 19271077 - 19270939
Alignment:
| Q |
114 |
tttgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
213 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
19271077 |
tttgctatgactaaggagaagatcaacgaatacatggaaatagcgaaaacagcgccattcaaccctcaccataattttgcttggcaatgcgtcatagcta |
19270978 |
T |
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| Q |
214 |
cacttgctccacaattttatactcaagaagagttagcac |
252 |
Q |
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| T |
19270977 |
cacttgctccccaattttatactcaagaagagttggcac |
19270939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 39616530 - 39616398
Alignment:
| Q |
116 |
tgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagctaca |
215 |
Q |
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| T |
39616530 |
tgctatcactagggagaagatcaaaggatacatggaaaaagcaaaaacggcgccactcaacctttcccataactttgcttggcaatgcgtgatagctata |
39616431 |
T |
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| Q |
216 |
cttgctccacaattttatactcaagaagagtta |
248 |
Q |
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| T |
39616430 |
cgtgctccacaattttattctgaagaagagtta |
39616398 |
T |
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