View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_4 (Length: 680)
Name: NF11470_low_4
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 75 - 675
Target Start/End: Complemental strand, 34536719 - 34536119
Alignment:
| Q |
75 |
ctaaccttatgatcggaggaaagaggaatggcaaccccgttccggcaaaggactgcccgtgaatcaccacaattcgagacaatgattttctccggcgtaa |
174 |
Q |
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| T |
34536719 |
ctaaccttatgatcggaggaaagaggaatggcaaccccgttccggcaaaggacggcccgtgaatcaccacaattcgagacaatgattttctccggcgtaa |
34536620 |
T |
|
| Q |
175 |
caacggcaacaacagcagtagaaccaacagcatcacagtgaggagtttgaagctcacacttacaactgaagctctgtttcgtcttactagaattcaacac |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34536619 |
caacggcaacaacagcagtagaaccaacagcatcacagtgaggagtttgaagctcacacttacaactgaagctctgtttcgtcttactagaattcaacac |
34536520 |
T |
|
| Q |
275 |
ttcttcatccattctaataaaactcttctccatcgttgacttccagtcaaccttctctttctctacttcttcttcaacaatttcatgcaacctttcttta |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34536519 |
ttcttcatccattctaataaaactcttctccatcgttgatttccagtcaaccttctctttctctacttcttcttcaacaatttcatgcaacctttcttta |
34536420 |
T |
|
| Q |
375 |
cacatagtcgcaacctgttaaaaacaaattaacgtaattaaaaaacagatccactnnnnnnnttattatgaatttatgataacgattattagaatttcga |
474 |
Q |
| |
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| T |
34536419 |
cacatagtcgcaacctgttaaaaacaaattaacgtaattaaaaaatagatccactaaaaaaattattatgaatttatgataacgattattagaatttcga |
34536320 |
T |
|
| Q |
475 |
gcaattacatgtgaacaaccatgaccgtcgtaaacaccgaagaaatgatcttgtttttcgctacaaaacgatgaatgaacagaaacagcgtcttccattt |
574 |
Q |
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| T |
34536319 |
gcaattacatgtgaacaaccatgaccgtcgtaaacaccgaagaaatgatcttgtttttctctacaaaacgatggatgaacagaaacagcgtcttccattt |
34536220 |
T |
|
| Q |
575 |
ctcttcttcttccacaaactgatgttattccatatttaggagaacactcttcaacaacaacaactttgttttccataacaacttcgttttcctttgcttc |
674 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| ||| |
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| T |
34536219 |
ctcttcttcttccacaaaccgatgttattccatatttaggagaacactcttcaacaacaaccactttgttttccaagacaacttcattttcctttgattc |
34536120 |
T |
|
| Q |
675 |
t |
675 |
Q |
| |
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| T |
34536119 |
t |
34536119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 30836635 - 30836484
Alignment:
| Q |
81 |
ttatgatcggaggaaagaggaatggcaaccccgttccggcaaaggactgcccgtgaatcaccacaattcgagacaatgattttctccggcgtaacaacgg |
180 |
Q |
| |
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|||||||| ||||| |||||||| || || || || |||||||| || || | |||||||||||| || || || || ||||| | || |||||||| | |
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| T |
30836635 |
ttatgatctgaggagagaggaatagcgacaccattacggcaaagaacagctcttgaatcaccacagtttgaaacgataattttgtttggagtaacaacag |
30836536 |
T |
|
| Q |
181 |
caacaacagcagtagaaccaacagcatcacagtgaggagtttgaagctcaca |
232 |
Q |
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| T |
30836535 |
ctacaacagctgtggatccaacagcatcacagtgaggagtttgaagctcaca |
30836484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 635
Target Start/End: Original strand, 28415686 - 28415756
Alignment:
| Q |
565 |
tcttccatttctcttcttcttccacaaactgatgttattccatatttaggagaacactcttcaacaacaac |
635 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||| || |||||||| | |||||||||||| |
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| T |
28415686 |
tcttccatttctcttctccttccacaaaacaatgttattccatactttggagaacaattttcaacaacaac |
28415756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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