View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_40 (Length: 270)
Name: NF11470_low_40
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 48710471 - 48710722
Alignment:
| Q |
1 |
ttaatttcacagttgttcacaggggaaacttctggattagtaatttgcatgacatccatatctatgttttgactaaaatctccatagaaggaaacatttg |
100 |
Q |
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| T |
48710471 |
ttaatttcacagttgttcacaggggaaacttctggattagtaatttgcatgacatccatatctatgttttgactaaaatctccatagaaggaaacatttg |
48710570 |
T |
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| Q |
101 |
attcagttttgactaaatggactaggtggataaggtgtgcctggagagacctcaacagcacctaaatcatcatgatgataaggattattactgctttcat |
200 |
Q |
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| T |
48710571 |
attcagttt-gactaaatggactaggtggataaggtgtgcctggagagacctcaacagcacctaaatcatcatgatgataaggattattactgctttcat |
48710669 |
T |
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| Q |
201 |
ttatattttctgttttcttgaatgtgtgactactcatgtctctttgatcaaac |
253 |
Q |
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| T |
48710670 |
ttatattttctgttttcttgaatgtgtgactactcaagtctctttgatcaaac |
48710722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 48699008 - 48699230
Alignment:
| Q |
3 |
aatttcacagttgttcacaggggaaacttctggattagtaatttgcatgacatccatatctatgttttgactaaaatctccatagaaggaaacatttgat |
102 |
Q |
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| T |
48699008 |
aatttcacagttgttcacaggggaaacttcctgattagtaatttgtacaacatccaattccgtgtttggactaaaatcgccattcaaggaaacgtttgat |
48699107 |
T |
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| Q |
103 |
tcagttttgactaaatggactaggtggataaggtgtgcctggagagacctcaacagcacctaaatcatcatgatgataaggattattactgctttcattt |
202 |
Q |
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| T |
48699108 |
tcag-tttgactagatggactaggcggacaatgtgtacctggagaggcctcaactgcaccgaaatcatcatgatg---aggactattactgctttcatgt |
48699203 |
T |
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| Q |
203 |
atattttctgttttcttgaatgtgtga |
229 |
Q |
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| T |
48699204 |
ttatttccactcttcttgaatgtgtga |
48699230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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