View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_low_49 (Length: 242)

Name: NF11470_low_49
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_low_49
NF11470_low_49
[»] chr1 (2 HSPs)
chr1 (136-224)||(51416731-51416819)
chr1 (1-73)||(51416596-51416668)
[»] chr5 (1 HSPs)
chr5 (12-56)||(9202377-9202421)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 51416731 - 51416819
Alignment:
Q  136 ctgatcaaccatactctaaatcaactaaaccgaatcacaaaattcatcaaagcaaattatcatgattcaatatcttgcatgcatacggt 224  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51416731 ctgatcaaccatactctacatcaagtaaaccgaatcacaaaattcatcaaagcaaattatcatgattcaatatcttgcatgcatacggt 51416819  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 51416596 - 51416668
Alignment:
Q  1 ctcttgtgcataagaacatcttctgctctttccacattcacatctaacgcatacctgcattacacaatacatt 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51416596 ctcttgtgcataagaacatcttctgctctttccacattcacatctaacgcatacctgcattacacaatacatt 51416668  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 9202421 - 9202377
Alignment:
Q  12 aagaacatcttctgctctttccacattcacatctaacgcatacct 56  Q
    |||||||||||||||||| |||||||||||||| || ||||||||    
T  9202421 aagaacatcttctgctctctccacattcacatccaatgcatacct 9202377  T

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