View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_53 (Length: 239)
Name: NF11470_low_53
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 26316479 - 26316623
Alignment:
| Q |
16 |
gtagtgagatgtggattacgttgaataggattcaaaggaaactaaaatcagttcctattatttctccattcatttttattgctattgaccttcacttagt |
115 |
Q |
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| T |
26316479 |
gtagtgagatgtggattacgttgaataggattcaaaggaaactaaaatcagttcctattatttctccattcatttttattgctattgaccttcacttagt |
26316578 |
T |
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| Q |
116 |
tacttctttgaatcattccactaatacctatctatgaggatccac |
160 |
Q |
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| T |
26316579 |
tgcttctttgaatcattccactaatacctatctatgaggatccac |
26316623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 26316625 - 26316672
Alignment:
| Q |
185 |
tgcctaattgattttcctctcctttcttatacttggaaagtagttctt |
232 |
Q |
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| T |
26316625 |
tgcctaaatgattttcctctcctttcttatacgtggaaagtaattctt |
26316672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 27026007 - 27026111
Alignment:
| Q |
111 |
ttagttacttctttgaatcattcca-ctaatacctatctatgaggatccacttgcaattggttttgagagatgtttgcctaattgattttcctctccttt |
209 |
Q |
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| T |
27026007 |
ttagttacttctttgaataattccaccaaatacctatctatgaggat-cacgtgcaattagttttaagagaaacatgcctaattgtttttcctctcgttt |
27026105 |
T |
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| Q |
210 |
cttata |
215 |
Q |
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| T |
27026106 |
cttata |
27026111 |
T |
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