View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_55 (Length: 233)
Name: NF11470_low_55
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 47242282 - 47242480
Alignment:
| Q |
19 |
attcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgacatcaccagctagtaataaaacaaca |
118 |
Q |
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| T |
47242282 |
attcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgacatcaccagctagtaataaaacaaca |
47242381 |
T |
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| Q |
119 |
attcaaattaccttttgattctcagaagcaatcccaacaaaaatcctgaaatgaatcacagcaagtgcaaataaacataattagtccaattaacttcat |
217 |
Q |
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| T |
47242382 |
attcaaattaccttttgattctcagaagcaatcccaacaaaactcctgaaatgaatcacagcaagtgaaaataaacagaattagtccaattaacttcat |
47242480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 47248726 - 47248877
Alignment:
| Q |
18 |
aattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgacatcaccagc---tagtaataaaac |
114 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||| | || ||||||||||| || | |||||||||||| |
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| T |
47248726 |
aattcaaactgcaaattggaattctgcaattaaaacaaacaa---acaattagtaaacacaacacaagcttttgacatcatcaactaatagtaataaaac |
47248822 |
T |
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| Q |
115 |
aacaattcaaattaccttttgattctcagaagcaatcccaacaaaaatcctgaaa |
169 |
Q |
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| T |
47248823 |
aatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaa |
47248877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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