View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_low_7 (Length: 588)
Name: NF11470_low_7
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 581
Target Start/End: Original strand, 54646490 - 54647057
Alignment:
| Q |
15 |
acaaagcccatgaagaaaatcgtaagcagctagagcttgaaatgaagaaaacagcagaaaatgataaaaagaaatgtgaatcagaaaggatattacctac |
114 |
Q |
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| T |
54646490 |
acaaagcccatgaagaaaatcgtaagcagctagagcttgaaatgaagaaaacagcagaaagtgataaaaagaaatgtgaatcggaaaggatattacctac |
54646589 |
T |
|
| Q |
115 |
aacggtccgaactggcaatgtcaaataagtaattattagacgaaattagctttgggagtccgtatatattctagcatgactaggaatttcaccacacaaa |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54646590 |
aacgatccgaactggcaatgtcaaataagtaattattagacgaaattagctttgggagtccgtatatattctagcatgactaggaatttcaccacacaaa |
54646689 |
T |
|
| Q |
215 |
tgtggttttggtgtttgggnnnnnnngaggggcgtgtattgtggcacatataatagtagctagc-ggcattgagaatcgaataactgcattacactacaa |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54646690 |
tgtggttttggtgtttgggtttttttgaggggcgtgtattgtggcacatataatagtagctagctggcattgagaatcgaataactgcattacactacaa |
54646789 |
T |
|
| Q |
314 |
agctgaggtaaattttcaaacctgtagttctatcactttagctgtactttgttctcccttatatagttctaacacgaatattctattgtgaattataaca |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54646790 |
agctgaggtaaattttcaaacctgtagttctatcactttagttgtactttgttctcccttatatagttctaacacgaatattctattgtgaattataaca |
54646889 |
T |
|
| Q |
414 |
gagggtggaatttgcatgagttatgttatttgccaaccaacttgtagttgtatataactcccctctccgcttagaaactgtatgattgtaagtatgaatt |
513 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54646890 |
gagggtggagtttgcatgagttatgttatttgccaaccaacttgtagttgtatataactcccctctccgcttagaaactgtatgattgtaagtataaata |
54646989 |
T |
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| Q |
514 |
tatatccaagaaaccagggcattggttgttattttatctctgccccctcagtcttggttctctctgct |
581 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54646990 |
tatatccaagaaaccagggcatttgttgttattttatctctgccccctcagtcttggttctctctgct |
54647057 |
T |
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