View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_low_9 (Length: 555)

Name: NF11470_low_9
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_low_9
NF11470_low_9
[»] chr4 (6 HSPs)
chr4 (63-359)||(10797573-10797871)
chr4 (106-163)||(51270190-51270247)
chr4 (110-197)||(51271763-51271855)
chr4 (106-155)||(17560000-17560049)
chr4 (106-163)||(52476620-52476677)
chr4 (200-237)||(51270822-51270859)
[»] chr5 (2 HSPs)
chr5 (110-354)||(15881436-15881685)
chr5 (382-478)||(37839390-37839484)
[»] scaffold0029 (3 HSPs)
scaffold0029 (212-359)||(55447-55594)
scaffold0029 (435-544)||(55331-55439)
scaffold0029 (50-193)||(55581-55729)
[»] chr3 (1 HSPs)
chr3 (258-360)||(53112787-53112889)
[»] chr8 (1 HSPs)
chr8 (258-354)||(10216566-10216662)
[»] chr1 (2 HSPs)
chr1 (105-197)||(22775214-22775311)
chr1 (127-163)||(22773912-22773948)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 63 - 359
Target Start/End: Complemental strand, 10797871 - 10797573
Alignment:
Q  63 cctcttctaaatctctcaagaaaaccgtcgccgccgccg-ccttc-ttccttccttccttcactgtaaaccgccgccgccgttcatcaggtttgtaactt 160  Q
    |||||| | |||||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||     
T  10797871 cctcttttcaatctctcaagaaaaccgccgccgccgccttccttccttccttccttccttcactgtaaaccgccgccgccgttcataaggtatgtaactc 10797772  T
Q  161 cttgatctcatgttttctgtcttccataaatctttctctattttcgaaatctcttctataaatctccctttaatgcgatttttattgatgtaaatgatga 260  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  10797771 cttgatctcatgttttctctcttctataaatctttctctattttcgaaatcttttctacaaatctccctttaatgcgatttttattaatgtaaatgatga 10797672  T
Q  261 aaatgatcggtttttattgatgtaaatgatgagtcatgatatgggtttccagtaatttaatcaatttcatttggggttgtgagggttggattttgagat 359  Q
    ||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10797671 aaaggatcgatttttattgatgtaaatgatgattcatgatatgggtttccagtaatttaatcaatttcatttggggttgcgagggttggattttgagat 10797573  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 51270247 - 51270190
Alignment:
Q  106 cttccttccttccttcactgtaaaccgccgccgccgttcatcaggtttgtaacttctt 163  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  51270247 cttccttccttccttcactgtaaaccgccgccaccgttcatcaggtttgttacttctt 51270190  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 51271855 - 51271763
Alignment:
Q  110 cttccttccttcac--tgtaaaccgccgccgccgttc---atcaggtttgtaacttcttgatctcatgttttctgtcttccataaatctttct 197  Q
    ||||||||||||||  ||  |||||||||||||||||   ||||||||||||| |||||||||||||||||||| || || ||||||||||||    
T  51271855 cttccttccttcacactggtaaccgccgccgccgttcttcatcaggtttgtaaattcttgatctcatgttttctctcgtctataaatctttct 51271763  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 17560049 - 17560000
Alignment:
Q  106 cttccttccttccttcactgtaaaccgccgccgccgttcatcaggtttgt 155  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  17560049 cttccttccttccttcactgtataccgctgccgccgttcatcaggtttgt 17560000  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 52476677 - 52476620
Alignment:
Q  106 cttccttccttccttcactgtaaaccgccgccgccgttcatcaggtttgtaacttctt 163  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||    
T  52476677 cttccttccttccttcactgtataccgctgccgccgttcatcaggttagttacttctt 52476620  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 51270859 - 51270822
Alignment:
Q  200 attttcgaaatctcttctataaatctccctttaatgcg 237  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  51270859 attttagaaatctcttttataaatctccctttaatgcg 51270822  T

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Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 110 - 354
Target Start/End: Original strand, 15881436 - 15881685
Alignment:
Q  110 cttccttccttcactgtaaaccgccgccgccgttcatcaggtttgtaacttcttgatctcatgttttctgtcttccataaatctttctctattttcgaaa 209  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  15881436 cttccttccttcactgtaaactgtcgccgccgttcatcaggtttgtaacttcttgatctcatgttttctctcttctataaatttttctctattttcgaaa 15881535  T
Q  210 tctcttctataaatctccctttaatgcgatt--tttattgatg----taaatgatgaaaatgatcggtttttattgatgtaaatgatgagtcatgatatg 303  Q
    ||||||||||||||||||| |||||||| ||  || ||   ||    ||  || |||||||||||| |||||||||||||||||||||| ||||||| ||    
T  15881536 tctcttctataaatctccc-ttaatgcggttgattcatccctgtttatatttgttgaaaatgatcgatttttattgatgtaaatgatgattcatgatctg 15881634  T
Q  304 ggtttccagtaatttaatcaatttcatttggggttgtgagggttggatttt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15881635 ggtttccagtaatttaatcaatttcatttggggttgtgagggttggatttt 15881685  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 37839390 - 37839484
Alignment:
Q  382 tgtgtttgtattctcctcaaatttggagattaaaaacttcgtcaaatactgtataggaaaaacaaattatatttttgcagctatgcatgagtaacat 478  Q
    ||||||||| ||||||| || ||||||| ||||||||||| ||||| |  |||||||||||||||||||||||| || |||||||||||| ||||||    
T  37839390 tgtgtttgttttctcctgaattttggagcttaaaaacttcatcaaaca--gtataggaaaaacaaattatatttctgtagctatgcatgaataacat 37839484  T

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Target: scaffold0029 (Bit Score: 128; Significance: 6e-66; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 55594 - 55447
Alignment:
Q  212 tcttctataaatctccctttaatgcgatttttattgatgtaaatgatgaaaatgatcggtttttattgatgtaaatgatgagtcatgatatgggtttcca 311  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  55594 tcttctttaaatctccctttaatgcgatttttattgatgtaaatgatgaaaaggatcgatttttattgatgtaaatgatgattcatgatatgggtttcca 55495  T
Q  312 gtaatttaatcaatttcatttggggttgtgagggttggattttgagat 359  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  55494 gtaatttaatcaatttcatttggggttgtgagagttggattttgagat 55447  T

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Target: scaffold0029; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 435 - 544
Target Start/End: Complemental strand, 55439 - 55331
Alignment:
Q  435 taggaaaaacaaattatatttttgcagctatgcatgagtaacatacatttggctgagctatttattttccttgatttaaattgatagtaaaatggttcaa 534  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  55439 taggaaaaacaaattatatttttgtagctatgcatgagtaagatacatttggctgagctatttattttcctt-atttaaattgatagtaaaatggttgaa 55341  T
Q  535 gtaatttcat 544  Q
    ||||||||||    
T  55340 gtaatttcat 55331  T

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Target: scaffold0029; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 55729 - 55581
Alignment:
Q  50 tacggccgccgctcctcttctaaatctctcaagaaaaccgtcgccgccgccgccttcttccttcct----tccttcactgtaaa-ccgccgccgccgttc 144  Q
    |||||| ||||||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||    |||||||||||||  ||  |||| ||||||    
T  55729 tacggctgccgctcctcttctaaatctctcaacaaaaccaccgccgccgctgccttcttccttcctaccttccttcactgtaagtccagcgccaccgttc 55630  T
Q  145 atcaggtttgtaacttcttgatctcatgttttctgtcttccataaatct 193  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  55629 atcaggtttgtaacttcttcatctcatgttttctgtcttctttaaatct 55581  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 53112889 - 53112787
Alignment:
Q  258 tgaaaatgatcggtttttattgatgtaaatgatgagtcatgatatgggtttccagtaatttaatcaatttcatttggggttgtgagggttggattttgag 357  Q
    |||||| ||| | |||||||  ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53112889 tgaaaaagattgatttttatacatgtaaatgatgattcatgatctgggtttccagtaatttaatcaatttcatttggggttgtgagggttggattttgag 53112790  T
Q  358 att 360  Q
    |||    
T  53112789 att 53112787  T

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Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 258 - 354
Target Start/End: Original strand, 10216566 - 10216662
Alignment:
Q  258 tgaaaatgatcggtttttattgatgtaaatgatgagtcatgatatgggtttccagtaatttaatcaatttcatttggggttgtgagggttggatttt 354  Q
    |||||| ||| | ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10216566 tgaaaaagattgatttttatagatgtaaatgatgattcatgatctgggtttccagtaatttaatcaatttcacttggggttgtgagggttggatttt 10216662  T

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Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 22775311 - 22775214
Alignment:
Q  105 tcttccttccttccttcac--tgtaaaccgccgccgccgttc---atcaggtttgtaacttcttgatctcatgttttctgtcttccataaatctttct 197  Q
    |||||||||||||||||||  ||  |||||||||||||||||   ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  22775311 tcttccttccttccttcacactggtaaccgccgccgccgttcttcatcaggtttgtaaattcttgatctcatgttttctctcttctataaatctttct 22775214  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 22773948 - 22773912
Alignment:
Q  127 aaaccgccgccgccgttcatcaggtttgtaacttctt 163  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  22773948 aaaccaccgccgccgttcatcaggtttgttacttctt 22773912  T

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