View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11471_high_13 (Length: 283)
Name: NF11471_high_13
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_high_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 25711394 - 25711130
Alignment:
| Q |
1 |
agttgcatattacacatgttgaatgctggcatggcagttgagtgcaactacgagta---attggtaagataagaaagtgcccatgcaagaaaggaactac |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25711394 |
agttgcatattacacatgttgaatattggcatggcagttgagtgcaactacgagtagtaattggtaagataagaaagtgcccatgcaagaaaggaactac |
25711295 |
T |
|
| Q |
98 |
taggctagtaggcagttttagccaaatgaaatttgttttggccttgccaagtgtccctatgacaaattctttgctccagttaggtgagactttgagttgg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25711294 |
taggctagtaggcagttttagccaaatgaaatttgttttggccttgccaagtgtccctatgacaaattctttgctacagttaggtgagactttgagttgg |
25711195 |
T |
|
| Q |
198 |
tgtgacctagttctgacacgtatgtttgtctatatataaactactactactattattgttataag |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
25711194 |
tgtgacctagttctgacacgtatgtttgtctatatataaactactcctactatgatttttataag |
25711130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 10385418 - 10385448
Alignment:
| Q |
253 |
ttgttataagagaaatgatatttgtacaacc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10385418 |
ttgttataagagaaatgatatttgtacaacc |
10385448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 29780883 - 29780916
Alignment:
| Q |
248 |
tattattgttataagagaaatgatatttgtacaa |
281 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
29780883 |
tattattattataagagaaatgatatttgtacaa |
29780916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 7376495 - 7376527
Alignment:
| Q |
251 |
tattgttataagagaaatgatatttgtacaacc |
283 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
7376495 |
tattcttataagagaaatgatatttgtacaacc |
7376527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 29795440 - 29795468
Alignment:
| Q |
255 |
gttataagagaaatgatatttgtacaacc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29795440 |
gttataagagaaatgatatttgtacaacc |
29795468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University