View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11471_high_15 (Length: 257)
Name: NF11471_high_15
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_high_15 |
 | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0100 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 49919 - 49676
Alignment:
| Q |
1 |
aatacttggatgtacacgtttggttttgtgaattgtgattattccaaacaatactctaatttaatttactttggattttaatatgattgaataaaactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49919 |
aatacttggatgtacacgtttggttttgtgaattgtgattattccaaacaatactctaatttaatttactatggattttaatatgattgaataaaactat |
49820 |
T |
|
| Q |
101 |
aagactaagacatgaaagttgtcacgtttaattaaatttcataggtataaaaatgttgtaataatgtttatgaatgaattatgtgcaggttacttaggag |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49819 |
aagactaagacatgagagttgtcacgtttaattaaattccataggtataaaaatgttgtaataatgtttatgaatgaattatgtgcaggttacttaggag |
49720 |
T |
|
| Q |
201 |
ggatgttgtgaaaagaacaggctcaggagggcgccatgatccct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49719 |
ggatgttgtgaaaagaacaggctcaggagggcgccatgatccct |
49676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University