View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11471_high_18 (Length: 239)
Name: NF11471_high_18
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28737679 - 28737451
Alignment:
| Q |
1 |
ataactgacccgaaagcaacaaaaacataaacccagatgaccaagggacaaccccaaaaatcataatcattaaagcaacaaataagagatgagtgagaac |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28737679 |
ataactgacccaaaagcaacaaaaacataaacccagatgaccaagggacaacaccaaaaatcataaacattaaagcaacaaataagagatgagtgagaac |
28737580 |
T |
|
| Q |
101 |
atcgaagattgaggacgacgtcgaagagtgagaacagagacggcgatgaagaaggggaaagggtaaggaacggcgacaagaaattgaggattggaagtga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28737579 |
agcgaagattgaggacgacgtcgaagagtgagaacagagacggcgatgaagaaggggaaagggtaaggaacggcgacaagaaattgaggactggaagtga |
28737480 |
T |
|
| Q |
201 |
tgcgtttctgcgtttggtttctgcctttg |
229 |
Q |
| |
|
||| ||||| ||||||| ||||||||||| |
|
|
| T |
28737479 |
tgcatttctacgtttggcttctgcctttg |
28737451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 38092573 - 38092643
Alignment:
| Q |
12 |
gaaagcaacaaaaacataaacccagatgaccaagggacaaccccaaaaatcat-aatcattaaagcaacaa |
81 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| |||||||||||| |||| || ||| |||||||||| |
|
|
| T |
38092573 |
gaaagcaacaaaaacatgaacccagataaccaaggcacaaccccaaaactcatgaaacatgaaagcaacaa |
38092643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University