View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_high_19 (Length: 239)
Name: NF11471_high_19
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 47907018 - 47906800
Alignment:
| Q |
1 |
caaaccatcctatatttcttcatcacatcaatatcccccattttctcccattcttccctaaatccattcaccgatttcaccactctaacaagattaacat |
100 |
Q |
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| T |
47907018 |
caaaccatcatatatttcttcatcacatcaatatccctcattttctcccattcttccctaaatccattcaccgatttcaccactctaacaagattaacat |
47906919 |
T |
|
| Q |
101 |
catacatccctattatatttaatgcaagtgaataaggacataagctataatcaaaatttgactcatcttcatcctcactcataaaacaatcttcaaaatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47906918 |
catatatccctattatatttaatgcaagtgaataaggacataagctataatcaaaatttgactcatcttcatcctcactcataaaacaatcttcaaaatt |
47906819 |
T |
|
| Q |
201 |
ttacacatcatcataaagt |
219 |
Q |
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||||||||||||||||||| |
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| T |
47906818 |
ttacacatcatcataaagt |
47906800 |
T |
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