View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_high_23 (Length: 204)
Name: NF11471_high_23
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 52271348 - 52271540
Alignment:
| Q |
1 |
aactctataagagagggactgtttggctagcctctcctcagtttcctcatcagatgatacatatgcatcatctttatccgtaaacatctgtgggatcatc |
100 |
Q |
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| T |
52271348 |
aactctataagagagggactgtttggctagcctctcctcagtttcctcatcagatgatacatatgcatcatctttatccgtaaacatctgcgggatcatc |
52271447 |
T |
|
| Q |
101 |
tgcttcgccttcttcagattcatcctcacagcatcagatggagcagtgaagtcttcaacttcatcgtcagattcattttcagtttctctgctt |
193 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52271448 |
tgcttcgccttcttcagattgatcctcacagcatcagatggagcagcgaagtcttcaacttcatcgtcagattcattttcagtttctttgctt |
52271540 |
T |
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