View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_high_4 (Length: 497)

Name: NF11471_high_4
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_high_4
NF11471_high_4
[»] chr8 (4 HSPs)
chr8 (11-481)||(114729-115199)
chr8 (166-477)||(178595-178906)
chr8 (307-477)||(607270-607440)
chr8 (83-142)||(15907689-15907749)
[»] chr4 (2 HSPs)
chr4 (166-447)||(37437612-37437885)
chr4 (46-117)||(49668568-49668638)
[»] scaffold0209 (2 HSPs)
scaffold0209 (347-474)||(9466-9593)
scaffold0209 (347-474)||(22920-23047)
[»] chr2 (3 HSPs)
chr2 (40-111)||(8198656-8198727)
chr2 (40-111)||(8203416-8203487)
chr2 (83-123)||(4558697-4558738)
[»] chr1 (1 HSPs)
chr1 (29-108)||(26706352-26706432)
[»] chr7 (1 HSPs)
chr7 (40-109)||(18128528-18128598)
[»] chr6 (2 HSPs)
chr6 (28-65)||(16419660-16419697)
chr6 (28-65)||(33547811-33547848)
[»] chr5 (2 HSPs)
chr5 (28-65)||(13953520-13953557)
chr5 (28-111)||(38458803-38458885)
[»] chr3 (1 HSPs)
chr3 (28-72)||(9357887-9357931)


Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Original strand, 114729 - 115199
Alignment:
Q  11 caaaggacctaagagggacttaaatgacaaacttattacaattaattaacttaaaaggatctaatagttacgaaaa-aacttaaagaccaatttattaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||    
T  114729 caaaggacctaagagggacttaaatgacaaacttattacaattaattaacttaaatg-atctaatagttatgaaaaaaacttaaagaccaatttattaca 114827  T
Q  110 ataaattacttaaggaacttcaggtgtaatttaaccttcattctaacacattaggaaaaagttattcaatacatataattttcaaataactaaaacatta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114828 ataaattacttaaggaacttcaggtgtaatttaaccttcattctaacacattaggaaaaagttattcaatacatataattttcaaataactaaaacatta 114927  T
Q  210 gaccaacaacgcgacgaaagttaaagatagtgaatattagaacagctatcccaattatggtagaactgcttctccaaggatcacgaaaataaacccacct 309  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  114928 gaccaacaacgcgacgaaagttaaagatagtgaatattagaacaactatcccgattatggtagaactgcttctccaaggatcacgaaaataaacccacct 115027  T
Q  310 taatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115028 taatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcat 115127  T
Q  410 agattgttaacaaggcttgttaattcctcgttgcttcccagatcgtgcacaatcacttctttctcaactagc 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115128 agattgttaacaaggcttgttaattcctcgttgcttcccagatcgtgcacaatcacttctttctcaactagc 115199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 166 - 477
Target Start/End: Complemental strand, 178906 - 178595
Alignment:
Q  166 aaaagttattcaatacatataattttcaaataactaaaacattagaccaacaacgcgacgaaagttaaagatagtgaatattagaacagctatcccaatt 265  Q
    |||||| ||||||||||||||||| | | |  |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| || ||| |||| |    
T  178906 aaaagtgattcaatacatataattataagaggactaaaacattagatcaacaactcgacgaaagttgaagatagtgaatattagaatagttattccaact 178807  T
Q  266 atggtagaactgcttctccaaggatcacgaaaataaacccaccttaatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttcca 365  Q
    | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| |    
T  178806 acggtagaactgcttctccaaggatcacggaaataaacccatcttaatgtacccatagcctttttccattcattgttgtagtgttcgttaagatcttcta 178707  T
Q  366 taagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaaggcttgttaattcctcgttgcttcccagatcgtgcacaatcac 465  Q
    |||||||||||||||| || ||||||||||||||||||||||||||  ||||||||||  | || |||||||||| ||||||||| |||||||| |  |     
T  178706 taagttggtaataacatgatgaatttgtcacaacatgtttgcataggctgttaacaagtgtcgtcaattcctcgtcgcttcccagttcgtgcaccacaat 178607  T
Q  466 ttctttctcaac 477  Q
    ||||||||||||    
T  178606 ttctttctcaac 178595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 307 - 477
Target Start/End: Complemental strand, 607440 - 607270
Alignment:
Q  307 ccttaatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttg 406  Q
    |||||||| |||||||||| || ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  607440 ccttaatggacccatagcctttctccatccactgttgtagtgttcattaagatcttccataagttggtaataacacgatgaattcgtcacaacatgtttg 607341  T
Q  407 catagattgttaacaaggcttgttaattcctcgttgcttcccagatcgtgcacaatcacttctttctcaac 477  Q
     ||| |||| ||||||| || ||||||||||||| |||||| || || ||||||||||  |||||||||||    
T  607340 gataaattgataacaagactcgttaattcctcgtggcttcctagttcatgcacaatcatatctttctcaac 607270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 15907749 - 15907689
Alignment:
Q  83 aaaaaacttaaagaccaatttattacaa-taaattacttaaggaacttcaggtgtaattta 142  Q
    ||||||||||||||||||||||| |||| ||||| |||||| | | ||| |||||||||||    
T  15907749 aaaaaacttaaagaccaatttatcacaagtaaataacttaaaggatttctggtgtaattta 15907689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 166 - 447
Target Start/End: Original strand, 37437612 - 37437885
Alignment:
Q  166 aaaagttattcaatacatataattttcaaataactaaaacattagaccaacaacgcgacgaaagttaaagatagtgaatattagaacagctatcccaatt 265  Q
    ||||||||||||||||||||||||||| |||||||||||   |||| |||| ||||| |||||||| |||||||||||||||||||||  |||||||| |    
T  37437612 aaaagttattcaatacatataattttctaataactaaaagtctagatcaacgacgcggcgaaagttgaagatagtgaatattagaacaattatcccaact 37437711  T
Q  266 atggtagaactgcttctccaaggatcacgaaaataaacccaccttaatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttcca 365  Q
    || ||| |||| |  ||||||||| ||||    |||||||| ||||||||||| |||||| |||||         ||| |||| ||||||| ||||||||    
T  37437712 atagtaaaactacccctccaaggaacacggttgtaaacccatcttaatgtaccaatagccgttttc--------attgcagtggtcattaaaatcttcca 37437803  T
Q  366 taagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaaggcttgttaattcctcgttgcttcc 447  Q
     |||||| || |||||||| ||||| | |||||||| ||||||||||||||| |  || ||||| ||||||| || ||||||    
T  37437804 caagttgatagtaacacgatgaattcgccacaacatatttgcatagattgttgatgagacttgtcaattccttgtggcttcc 37437885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 49668568 - 49668638
Alignment:
Q  46 ttacaattaattaacttaaaaggatctaatagttacgaaaaaacttaaagaccaatttattacaataaatta 117  Q
    |||||||||| ||||||||||| ||||||| | | |  |||||| ||||||||||||||||||||| |||||    
T  49668568 ttacaattaaataacttaaaag-atctaattggtgcataaaaacataaagaccaatttattacaattaatta 49668638  T

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Target: scaffold0209 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 347 - 474
Target Start/End: Original strand, 9466 - 9593
Alignment:
Q  347 tgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaaggcttgttaattcctcgttgcttc 446  Q
    ||||||| |||||| |||||||||||| |||||||||| |||||  |||||| |||||||||||||  |||||||||  | |  ||||||||||  ||||    
T  9466 tgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagaccgttaacaagattcgccaattcctcgtcacttc 9565  T
Q  447 ccagatcgtgcacaatcacttctttctc 474  Q
    | || |||||||||||||||||||||||    
T  9566 ctagttcgtgcacaatcacttctttctc 9593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 347 - 474
Target Start/End: Original strand, 22920 - 23047
Alignment:
Q  347 tgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaaggcttgttaattcctcgttgcttc 446  Q
    ||||||| |||||| |||||||||||| |||||||||| |||||  |||||| |||||||||||||  |||||||||  | |  ||||||||||  ||||    
T  22920 tgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagaccgttaacaagattcgccaattcctcgtcacttc 23019  T
Q  447 ccagatcgtgcacaatcacttctttctc 474  Q
    | || |||||||||||||||||||||||    
T  23020 ctagttcgtgcacaatcacttctttctc 23047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 8198656 - 8198727
Alignment:
Q  40 aacttattacaattaattaacttaaaaggatctaatagttacg-aaaaaacttaaagaccaatttattacaat 111  Q
    ||||||||||||||||||| |||||| ||| ||||  | |||| ||||||||||||||||||||| |||||||    
T  8198656 aacttattacaattaattatcttaaa-ggacctaagtggtacggaaaaaacttaaagaccaatttgttacaat 8198727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 8203416 - 8203487
Alignment:
Q  40 aacttattacaattaattaacttaaaaggatctaatagttacg-aaaaaacttaaagaccaatttattacaat 111  Q
    ||||||||||||||||||| |||||| ||| ||||  | |||| ||||||||||||||||||||| |||||||    
T  8203416 aacttattacaattaattatcttaaa-ggacctaagtggtacggaaaaaacttaaagaccaatttgttacaat 8203487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 4558738 - 4558697
Alignment:
Q  83 aaaaaacttaaagaccaatttattacaa-taaattacttaag 123  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  4558738 aaaaaacttaaagaccaatttattacaattaaataacttaag 4558697  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 26706352 - 26706432
Alignment:
Q  29 cttaaatgacaaacttattacaattaattaacttaaaaggatctaatagttacgaaaaaacttaaag-accaatttattac 108  Q
    |||||| ||||||||| | | ||||||||||||||||||||  |||  | ||||||||||||||||| | |||||||||||    
T  26706352 cttaaaggacaaacttgtaataattaattaacttaaaaggacttaaatgatacgaaaaaacttaaagaatcaatttattac 26706432  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 18128528 - 18128598
Alignment:
Q  40 aacttattacaattaattaacttaaaaggatctaa-tagttacgaaaaaacttaaa--gaccaatttattaca 109  Q
    |||||||||||||||||||||||||| | | |||| |||| |||||||||||||||  |||||||||||||||    
T  18128528 aacttattacaattaattaacttaaa-gaacctaagtagt-acgaaaaaacttaaaaggaccaatttattaca 18128598  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 16419697 - 16419660
Alignment:
Q  28 acttaaatgacaaacttattacaattaattaacttaaa 65  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  16419697 acttaaatgaccaacttgttacaattaattaacttaaa 16419660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 33547848 - 33547811
Alignment:
Q  28 acttaaatgacaaacttattacaattaattaacttaaa 65  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  33547848 acttaaaagacaaacttgttacaattaattaacttaaa 33547811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 13953520 - 13953557
Alignment:
Q  28 acttaaatgacaaacttattacaattaattaacttaaa 65  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  13953520 acttaaaagacaaacttgttacaattaattaacttaaa 13953557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 38458803 - 38458885
Alignment:
Q  28 acttaaatgacaaacttattacaattaattaacttaaaaggatctaatagttacg-aaaaaacttaaagaccaatttattacaat 111  Q
    ||||||||||| ||||||||||||| || |||||||||| ||| |||  | |||| |||||||||||| || |||||||||||||    
T  38458803 acttaaatgactaacttattacaataaaataacttaaaa-gatataagtggtacgaaaaaaacttaaa-actaatttattacaat 38458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 9357887 - 9357931
Alignment:
Q  28 acttaaatgacaaacttattacaattaattaacttaaaaggatct 72  Q
    ||||||| ||| ||||||||| |||||| ||||||||||||||||    
T  9357887 acttaaaggaccaacttattataattaaataacttaaaaggatct 9357931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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