View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_high_7 (Length: 335)

Name: NF11471_high_7
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_high_7
NF11471_high_7
[»] chr5 (23 HSPs)
chr5 (1-325)||(38170078-38170398)
chr5 (1-325)||(38452512-38452832)
chr5 (4-325)||(38182203-38182519)
chr5 (4-325)||(38188612-38188928)
chr5 (4-325)||(38209429-38209745)
chr5 (4-325)||(38215837-38216153)
chr5 (4-319)||(38185870-38186179)
chr5 (4-319)||(38212178-38212487)
chr5 (21-325)||(38156186-38156482)
chr5 (72-319)||(38220594-38220835)
chr5 (1-176)||(38220196-38220371)
chr5 (72-176)||(38220376-38220480)
chr5 (72-176)||(38220485-38220589)
chr5 (18-128)||(38443743-38443853)
chr5 (203-278)||(38443919-38443991)
chr5 (84-146)||(38443725-38443787)
chr5 (6-48)||(38156255-38156297)
chr5 (84-132)||(38170077-38170125)
chr5 (5-48)||(38220393-38220436)
chr5 (5-48)||(38220502-38220545)
chr5 (5-48)||(38220611-38220654)
chr5 (84-132)||(38220195-38220243)
chr5 (84-132)||(38452785-38452833)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 38170078 - 38170398
Alignment:
Q  1 ttcgcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38170078 ttcgcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgt 38170177  T
Q  101 cgtgaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||              ||||||||||    
T  38170178 cgtgaatgatgaattcgaagatattctaaaatcgttttggaagcattgctttttgaaggctaatgtagttctctaa----aaaaaaaattgaagtgtagt 38170273  T
Q  201 taaattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38170274 taaattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatattt 38170373  T
Q  301 gttatattttacttgcttttctctg 325  Q
    |||||||||||||||||||||||||    
T  38170374 gttatattttacttgcttttctctg 38170398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38452832 - 38452512
Alignment:
Q  1 ttcgcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38452832 ttcgcggactacatgttatgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactacatgt 38452733  T
Q  101 cgtgaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||              ||||||||||    
T  38452732 cgtgaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaagcctaatgtagttctctaa----ttttttttttgaagtgtagt 38452637  T
Q  201 taaattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatattt 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38452636 taaattgtacggattcaaattgattaatatattggttcttttttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatattt 38452537  T
Q  301 gttatattttacttgcttttctctg 325  Q
    |||||||||||||||||||||||||    
T  38452536 gttatattttacttgcttttctctg 38452512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 325
Target Start/End: Complemental strand, 38182519 - 38182203
Alignment:
Q  4 gcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgtcgt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| ||||| ||||||||||||||    
T  38182519 gcggaatacatgttgtgaatgatgaatttgaagatattctaaaattatatttgaagcgcaatttttctaaggtgaaggactttcaaggactgcatgtcgt 38182420  T
Q  104 gaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagttaa 203  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||              |||||||||||||    
T  38182419 gaacgatgaatttgaagatattctaaaatcgttttggaagcgttgctttttgaagcctaatatagttttctaa-----attttttttgaagtgtagttaa 38182325  T
Q  204 attgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatatttgtt 303  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38182324 attgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcacttatatctattacgtatctatatttgtt 38182225  T
Q  304 atattttacttgcttttctctg 325  Q
    ||||||||||||||||||||||    
T  38182224 atattttacttgcttttctctg 38182203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 38188612 - 38188928
Alignment:
Q  4 gcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgtcgt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| ||||| ||||||||||||||    
T  38188612 gcggaatacatgttgtgaatgatgaatttgaagatattctaaaattatatttgaagcgcaatttttctaaggtgaaggactttcaaggactgcatgtcgt 38188711  T
Q  104 gaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagttaa 203  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||              |||||||||||||    
T  38188712 gaacgatgaatttgaagatattctaaaatcgttttggaagcgttgctttttgaagcctaatatagttttctaa-----attttttttgaagtgtagttaa 38188806  T
Q  204 attgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatatttgtt 303  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38188807 attgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcacttatatctattacgtatctatatttgtt 38188906  T
Q  304 atattttacttgcttttctctg 325  Q
    ||||||||||||||||||||||    
T  38188907 atattttacttgcttttctctg 38188928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 325
Target Start/End: Complemental strand, 38209745 - 38209429
Alignment:
Q  4 gcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgtcgt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| ||||| ||||||||||||||    
T  38209745 gcggaatacatgttgtgaatgatgaatttgaagatattctaaaattatatttgaagcgcaatttttctaaggtgaaggactttcaaggactgcatgtcgt 38209646  T
Q  104 gaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagttaa 203  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||              |||||||||||||    
T  38209645 gaacgatgaatttgaagatattctaaaatcgttttggaagcgttgctttttgaagcctaatatagttttctaa-----attttttttgaagtgtagttaa 38209551  T
Q  204 attgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatatttgtt 303  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38209550 attgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcacttatatctattacgtatctatatttgtt 38209451  T
Q  304 atattttacttgcttttctctg 325  Q
    ||||||||||||||||||||||    
T  38209450 atattttacttgcttttctctg 38209429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 38215837 - 38216153
Alignment:
Q  4 gcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgtcgt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||  ||||||||||| ||||| ||||||||||||||    
T  38215837 gcggaatacatgttgtgaatgatgaatttgaagatattctaaaattatatttgaagcgcaatttttttaaggtgaaggactttcaaggactgcatgtcgt 38215936  T
Q  104 gaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagttaa 203  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||              |||||||||||||    
T  38215937 gaacgatgaatttgaagatattctaaaatcgttttggaagcgttgctttttgaagcctaatatagttttctaaatttttttt-----gaagtgtagttaa 38216031  T
Q  204 attgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatatttgtt 303  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38216032 attgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcacttatatctattacgtatctatatttgtt 38216131  T
Q  304 atattttacttgcttttctctg 325  Q
    ||||||||||||||||||||||    
T  38216132 atattttacttgcttttctctg 38216153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 4 - 319
Target Start/End: Original strand, 38185870 - 38186179
Alignment:
Q  4 gcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgtcgt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| |||||||||||| |||||||    
T  38185870 gcggaatacatgttgtgaatgatgaatttgaagatattctaaaattatatttgaagcgcaatttttctaaggtgaaggactttcacggactg-atgtcgt 38185968  T
Q  104 gaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagttaa 203  Q
    ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| || || |||||              |||||||||||||    
T  38185969 gaacgatgaatttgaagatattctaaaattgttttggaagcgttgctttttgaagcctaatataattttctaa-----attttttttgaagtgtagttaa 38186063  T
Q  204 attgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatatttgtt 303  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| | |||||| ||||||    
T  38186064 attgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcacttatctattttaagcatctatgtttgtt 38186163  T
Q  304 atattttacttgcttt 319  Q
    ||||||||||||||||    
T  38186164 atattttacttgcttt 38186179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 4 - 319
Target Start/End: Complemental strand, 38212487 - 38212178
Alignment:
Q  4 gcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgtcgt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| |||||||||||| |||||||    
T  38212487 gcggaatacatgttgtgaatgatgaatttgaagatattctaaaattatatttgaagcgcaatttttctaaggtgaaggactttcacggactg-atgtcgt 38212389  T
Q  104 gaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagttaa 203  Q
    ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| || || |||||              |||||||||||||    
T  38212388 gaacgatgaatttgaagatattctaaaattgttttggaagcgttgctttttgaagcctaatataattttctaa-----attttttttgaagtgtagttaa 38212294  T
Q  204 attgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatatttgtt 303  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| | |||||| ||||||    
T  38212293 attgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcacttatctattttaagcatctatgtttgtt 38212194  T
Q  304 atattttacttgcttt 319  Q
    ||||||||||||||||    
T  38212193 atattttacttgcttt 38212178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 38156186 - 38156482
Alignment:
Q  21 aatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgtcgtgaatgatgaattcgaag 120  Q
    ||||||||||||||||||||||||||||||| ||||| | |||||||||| |||  |||||| ||||| ||||| ||||| |||||||||||||||||||    
T  38156186 aatgatgaatttgaagatattctaaaattgtttttgaagcgcaatttttctaagaagaaggaatttcatggacttcatgttgtgaatgatgaattcgaag 38156285  T
Q  121 atattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaannnnnnnnnnnnnngaagtgtagttaaattgtacggattcaaat 220  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||              |||||||||||  | ||||| |||||||||    
T  38156286 atattctaaaatcgttttggaagcgttgctttttgaagcctaatgtagttctctaa-----tttttttttgaagtgtagtt--actgtacagattcaaat 38156378  T
Q  221 tgattaatatattggttctattttatcatggatttgtctcctatatttcttgcacttatctctattacgtatctatatttgttatattttacttgctttt 320  Q
     || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| | |||||| |||||| ||||||||||||||||    
T  38156379 cgagtaatatattggttct-ttttatcatggatttgtctcctatatttcttgcacttatctatgttaagcatctatgtttgttttattttacttgctttt 38156477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 72 - 319
Target Start/End: Original strand, 38220594 - 38220835
Alignment:
Q  72 aaggtgaaggattttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttc 171  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  38220594 aaggcgaaggaatttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaatcgttttggaagtgttgctttttgaaacctaatgtagttc 38220693  T
Q  172 tctaannnnnnnnnnnnnngaagtgtagttaaattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttctt 271  Q
    |||||              |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220694 tctaattttctttt-----gaagtgtagtcaa-ttgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttctt 38220787  T
Q  272 gcacttatctctattacgtatctatatttgttatattttacttgcttt 319  Q
    |||||||||| | ||| | |||||| ||||||||||||||||||||||    
T  38220788 gcacttatctatgttaagcatctatgtttgttatattttacttgcttt 38220835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 38220196 - 38220371
Alignment:
Q  1 ttcgcggactacatgttgtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||||||||    
T  38220196 ttcgcggactacatgttatgaatgatgaatttgaagatattctaaaattttatttgacgtgcaatttttctaaggcgaaggaatttcacggactgcatgt 38220295  T
Q  101 cgtgaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttctctaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  38220296 cgtgaatgatgaattcgaagatattctaaaatcgttttggaagtgttgctttttgaaacctaatgtagttctctaa 38220371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 38220376 - 38220480
Alignment:
Q  72 aaggtgaaggattttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttc 171  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  38220376 aaggcgaaggaatttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaatcgttttggaagtgttgctttttgaaacctaatgtagttc 38220475  T
Q  172 tctaa 176  Q
    |||||    
T  38220476 tctaa 38220480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 38220485 - 38220589
Alignment:
Q  72 aaggtgaaggattttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaatcgttttggaagcgttgctttttgaaggctaatgtagttc 171  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||    
T  38220485 aaggcgaaggaatttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaatcattttggaagtgttgctttttgaaacctaatgtagttc 38220584  T
Q  172 tctaa 176  Q
    |||||    
T  38220585 tctaa 38220589  T

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Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 38443743 - 38443853
Alignment:
Q  18 gtgaatgatgaatttgaagatattctaaaattgtatttgacgtgcaatttttccaaggtgaaggattttcacggactgcatgtcgtgaatgatgaattcg 117  Q
    |||||||||||||||||||||||||||||| ||| ||||| | | |||||||| |||  |||||| ||||| ||||| ||  ||||||| ||||||||||    
T  38443743 gtgaatgatgaatttgaagatattctaaaactgtttttgaagcgtaatttttcaaagaagaaggaatttcatggactacacatcgtgaacgatgaattcg 38443842  T
Q  118 aagatattcta 128  Q
    |||||||||||    
T  38443843 aagatattcta 38443853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 38443919 - 38443991
Alignment:
Q  203 aattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcactta 278  Q
    ||||||| ||||||||||| |||||||||||||||   ||||||||||||| |||||| |||||||||| ||||||    
T  38443919 aattgtatggattcaaatttattaatatattggtt---ttttatcatggatctgtctcatatatttcttccactta 38443991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 38443725 - 38443787
Alignment:
Q  84 tttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaatcgttttggaagcgt 146  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||||  ||||| |||||||    
T  38443725 tttcatggactgcatatcgtgaatgatgaatttgaagatattctaaaactgtttttgaagcgt 38443787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 38156255 - 38156297
Alignment:
Q  6 ggactacatgttgtgaatgatgaatttgaagatattctaaaat 48  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  38156255 ggacttcatgttgtgaatgatgaattcgaagatattctaaaat 38156297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 38170077 - 38170125
Alignment:
Q  84 tttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaat 132  Q
    |||| |||||| ||||| |||||||||||||| ||||||||||||||||    
T  38170077 tttcgcggactacatgttgtgaatgatgaatttgaagatattctaaaat 38170125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 38220393 - 38220436
Alignment:
Q  5 cggactacatgttgtgaatgatgaatttgaagatattctaaaat 48  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||    
T  38220393 cggactgcatgtcgtgaatgatgaattcgaagatattctaaaat 38220436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 38220502 - 38220545
Alignment:
Q  5 cggactacatgttgtgaatgatgaatttgaagatattctaaaat 48  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||    
T  38220502 cggactgcatgtcgtgaatgatgaattcgaagatattctaaaat 38220545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 38220611 - 38220654
Alignment:
Q  5 cggactacatgttgtgaatgatgaatttgaagatattctaaaat 48  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||    
T  38220611 cggactgcatgtcgtgaatgatgaattcgaagatattctaaaat 38220654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 38220195 - 38220243
Alignment:
Q  84 tttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaat 132  Q
    |||| |||||| |||||  ||||||||||||| ||||||||||||||||    
T  38220195 tttcgcggactacatgttatgaatgatgaatttgaagatattctaaaat 38220243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 38452833 - 38452785
Alignment:
Q  84 tttcacggactgcatgtcgtgaatgatgaattcgaagatattctaaaat 132  Q
    |||| |||||| |||||  ||||||||||||| ||||||||||||||||    
T  38452833 tttcgcggactacatgttatgaatgatgaatttgaagatattctaaaat 38452785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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