View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_high_9 (Length: 327)

Name: NF11471_high_9
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_high_9
NF11471_high_9
[»] chr7 (1 HSPs)
chr7 (18-306)||(33956151-33956439)
[»] scaffold0067 (1 HSPs)
scaffold0067 (296-327)||(26182-26213)
[»] scaffold0005 (1 HSPs)
scaffold0005 (296-327)||(238917-238948)
[»] chr4 (4 HSPs)
chr4 (296-327)||(14578427-14578458)
chr4 (297-327)||(29548170-29548200)
chr4 (298-327)||(24415367-24415396)
chr4 (299-327)||(8482851-8482879)
[»] chr3 (5 HSPs)
chr3 (296-327)||(44895638-44895669)
chr3 (297-326)||(9630758-9630787)
chr3 (298-326)||(14004128-14004156)
chr3 (299-327)||(38511950-38511978)
chr3 (299-327)||(51214452-51214480)
[»] chr2 (1 HSPs)
chr2 (297-327)||(19256882-19256912)
[»] chr8 (1 HSPs)
chr8 (295-324)||(38701955-38701984)
[»] chr1 (2 HSPs)
chr1 (298-327)||(45884939-45884968)
chr1 (299-327)||(46320969-46320997)
[»] chr6 (1 HSPs)
chr6 (299-327)||(4405534-4405562)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 33956439 - 33956151
Alignment:
Q  18 aattcagacactggaggtctttctgctgcctttggacaacctggctatccttatggagagtccttctttcatcaccctgttggtcgctactgtgatggtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33956439 aattcagacactggaggtctttctgctgcctttggacaacctggctatccttatggagagtccttctttcatcaccctgttggtcgctactgtgatggtc 33956340  T
Q  118 gtcttcttgttgatttcatcggtactactaactagttccattattcatatttactttcttttcattctttctgtgtgtttgggtgaatctatgtgtatta 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33956339 gtcttcttgttgatttcattggtactactaactagttccattattcatatttactttcttttcattctttctgtgtgtttgggtgaatctatgtgtatta 33956240  T
Q  218 gtgtgtaaagctaaggataagatcagatttttgttttcaagctcaatctagtataaaattactattattttgtcattaaataaaaaata 306  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33956239 gtgtgtaaagctaaggataagataagatttttgttttcaagctcaatctagtataaaattactattattttgtcattaaataaaaaata 33956151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 327
Target Start/End: Original strand, 26182 - 26213
Alignment:
Q  296 aataaaaaataggcttaattgcacttttggac 327  Q
    ||||||||||||||||||||||||||||||||    
T  26182 aataaaaaataggcttaattgcacttttggac 26213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 327
Target Start/End: Complemental strand, 238948 - 238917
Alignment:
Q  296 aataaaaaataggcttaattgcacttttggac 327  Q
    ||||||||||||||||||||||||||||||||    
T  238948 aataaaaaataggcttaattgcacttttggac 238917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 327
Target Start/End: Original strand, 14578427 - 14578458
Alignment:
Q  296 aataaaaaataggcttaattgcacttttggac 327  Q
    ||||||||||||||||||||||||||||||||    
T  14578427 aataaaaaataggcttaattgcacttttggac 14578458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 29548170 - 29548200
Alignment:
Q  297 ataaaaaataggcttaattgcacttttggac 327  Q
    |||||||||||||||||||||||||||||||    
T  29548170 ataaaaaataggcttaattgcacttttggac 29548200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 327
Target Start/End: Complemental strand, 24415396 - 24415367
Alignment:
Q  298 taaaaaataggcttaattgcacttttggac 327  Q
    ||||||||||||||||||||||||||||||    
T  24415396 taaaaaataggcttaattgcacttttggac 24415367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 299 - 327
Target Start/End: Original strand, 8482851 - 8482879
Alignment:
Q  299 aaaaaataggcttaattgcacttttggac 327  Q
    |||||||||||||||||||||||||||||    
T  8482851 aaaaaataggcttaattgcacttttggac 8482879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 327
Target Start/End: Original strand, 44895638 - 44895669
Alignment:
Q  296 aataaaaaataggcttaattgcacttttggac 327  Q
    ||||||||||||||||||||||||||||||||    
T  44895638 aataaaaaataggcttaattgcacttttggac 44895669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 9630758 - 9630787
Alignment:
Q  297 ataaaaaataggcttaattgcacttttgga 326  Q
    ||||||||||||||||||||||||||||||    
T  9630758 ataaaaaataggcttaattgcacttttgga 9630787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 14004156 - 14004128
Alignment:
Q  298 taaaaaataggcttaattgcacttttgga 326  Q
    |||||||||||||||||||||||||||||    
T  14004156 taaaaaataggcttaattgcacttttgga 14004128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 38511978 - 38511950
Alignment:
Q  299 aaaaaataggcttaattgcacttttggac 327  Q
    |||||||||||||||||||||||||||||    
T  38511978 aaaaaataggcttaattgcacttttggac 38511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 51214480 - 51214452
Alignment:
Q  299 aaaaaataggcttaattgcacttttggac 327  Q
    |||||||||||||||||||||||||||||    
T  51214480 aaaaaataggcttaattgcacttttggac 51214452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 327
Target Start/End: Complemental strand, 19256912 - 19256882
Alignment:
Q  297 ataaaaaataggcttaattgcacttttggac 327  Q
    |||||||||||||||||||||||||||||||    
T  19256912 ataaaaaataggcttaattgcacttttggac 19256882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 324
Target Start/End: Complemental strand, 38701984 - 38701955
Alignment:
Q  295 aaataaaaaataggcttaattgcacttttg 324  Q
    ||||||||||||||||||||||||||||||    
T  38701984 aaataaaaaataggcttaattgcacttttg 38701955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 45884939 - 45884968
Alignment:
Q  298 taaaaaataggcttaattgcacttttggac 327  Q
    ||||||||||||||||||||||||||||||    
T  45884939 taaaaaataggcttaattgcacttttggac 45884968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 46320997 - 46320969
Alignment:
Q  299 aaaaaataggcttaattgcacttttggac 327  Q
    |||||||||||||||||||||||||||||    
T  46320997 aaaaaataggcttaattgcacttttggac 46320969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 4405562 - 4405534
Alignment:
Q  299 aaaaaataggcttaattgcacttttggac 327  Q
    |||||||||||||||||||||||||||||    
T  4405562 aaaaaataggcttaattgcacttttggac 4405534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University