View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_low_1 (Length: 1176)

Name: NF11471_low_1
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_low_1
NF11471_low_1
[»] chr6 (5 HSPs)
chr6 (286-1157)||(31609815-31610680)
chr6 (2-89)||(31609727-31609815)
chr6 (609-688)||(6983817-6983896)
chr6 (700-746)||(3436215-3436261)
chr6 (8-57)||(30877845-30877895)
[»] chr4 (3 HSPs)
chr4 (90-285)||(18062723-18062919)
chr4 (8-56)||(8880438-8880486)
chr4 (5-59)||(44646712-44646767)
[»] chr5 (4 HSPs)
chr5 (617-738)||(5029481-5029603)
chr5 (681-746)||(9042541-9042607)
chr5 (612-695)||(43135775-43135858)
chr5 (8-56)||(6828833-6828882)
[»] chr2 (5 HSPs)
chr2 (90-160)||(16141593-16141663)
chr2 (612-746)||(35698705-35698840)
chr2 (700-740)||(14802198-14802237)
chr2 (2-58)||(2288453-2288510)
chr2 (699-744)||(15361291-15361336)
[»] chr3 (3 HSPs)
chr3 (96-160)||(34883404-34883468)
chr3 (604-689)||(54581497-54581582)
chr3 (700-743)||(26828742-26828785)
[»] chr8 (1 HSPs)
chr8 (706-741)||(24257338-24257373)
[»] chr1 (1 HSPs)
chr1 (5-57)||(19893444-19893497)


Alignment Details
Target: chr6 (Bit Score: 706; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 286 - 1157
Target Start/End: Original strand, 31609815 - 31610680
Alignment:
Q  286 tgaaaaaggtccacatccaagttccaattccctagcctctaaagcccacaccgtcctcccatttttgtgaatttcttattgcaccctccaattggttgtg 385  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31609815 tgaaaaaggtccacatccaagttccaattccctagcctctgaagcccacaccgccctcccatttttgtgaatttcttattgcaccctccaattggttgtg 31609914  T
Q  386 caccctactttttggattctaaaatccaagagtaaaaatagatttttcatgtttttacccattcaaaagatagaatccaaaatatcaatttggtggagga 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31609915 caccctactttttggattctaaaatccaagagtaaaaatagatttt-catgtttttacccattcaaaagatagaatccaaaatatcaatttggtggagga 31610013  T
Q  486 gaaaggcagaagcgataagaaattaccctattttcatagttagaaatactataaaagtgacaaactaactcaaatgaatctagcccaatcatacatttga 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31610014 gaaaggcagaagcgataagaaattaccctattttcatagttagaaatactataaaagtgacaaactaactcaaatgaatctagcccaatcatacatttga 31610113  T
Q  586 ttagcaatatgtatccacacttatgttgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaa 685  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  31610114 ttagcactatgtatccacatttatgttgtgtttggaatagcggtggaaagccaccaaatccacgtctatacaaaagctagaatttgcagttttgaaaaaa 31610213  T
Q  686 tcacatcaaaaattattggaaagtgagaaacatgatgcaaactccaatccaaacactcacttagtaagcatacatctctccaccatgtggaagaatggta 785  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  31610214 tcacatcaaaagttattggaaagtgagaaacatgatgcgaactccaatccaaacactcacttagtaagcatacatctctccaccatgtcgaagaatgata 31610313  T
Q  786 tggaaagcaaaatccaccaaaaccttttttgatagagttgattatgatatgggaggcttcatctccacttagccatagtattaacaaaccatatatccct 885  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  31610314 tggaaagcaaaatccaccaaaaccttttttgatagagttgattatgatatgggaggcttcatctccacttagccatagtattaacaaacc--atatccct 31610411  T
Q  886 tgcttaggcttttatagagtgccacatacctctataaattgtgttgagaattttacattagacatgacttaatagttaatattatgttcataagtggtaa 985  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  31610412 tgcttaggcttttatagactgccgcatacctctataaattgtgttgagaattttacattagacatg--ttaatagttaata-tatgttcataagtggtaa 31610508  T
Q  986 aagtttttcatattataaatcgattttgctatattcaacctaaattctaaaatgatattagagcttataagaaatccatttgaccatccgctaatgggtt 1085  Q
    |||||||||| ||||||| || |||||| |||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||     
T  31610509 aagtttttcacattataagtcaattttgttatattcaacctaaattctaaaatggcattagagtttataagaaatccatttgaccacccgctaatgggtc 31610608  T
Q  1086 attcaaaccaaatgattatattttagttgttcggtcctaaacatggtgaaagtacgttaaaaatcttacatc 1157  Q
    |||||| | || |||||| |||||| ||||||| |||||||| ||||||  ||||||||||| ||| |||||    
T  31610609 attcaagctaagtgattacattttaattgttcgatcctaaacgtggtgagcgtacgttaaaagtctcacatc 31610680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 31609727 - 31609815
Alignment:
Q  2 ataattaaaaagtcttttaaaatcctttgaaaactt-attcaatacacccccctaaaacttttagtttcttcaaaaaagaccttactat 89  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31609727 ataattaaaaagtcttttaaaatccattgaaaacttcattcaatacacccccctaaatcttttagtttcttcaaaaaagaccttactat 31609815  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 609 - 688
Target Start/End: Original strand, 6983817 - 6983896
Alignment:
Q  609 tgttgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatca 688  Q
    |||||||||||||||||||||| | || ||  |||| |||||| | || ||||||||||||| |||||||| ||||||||    
T  6983817 tgttgtgtttggaatagcggtgaacagtcattaaacgcacgtctaaactaaagctagaattttcagttttgtaaaaatca 6983896  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 700 - 746
Target Start/End: Original strand, 3436215 - 3436261
Alignment:
Q  700 attggaaagtgagaaacatgatgcaaactccaatccaaacactcact 746  Q
    ||||| ||||||||| ||| ||| |||||||||||||||||||||||    
T  3436215 attgggaagtgagaagcattatggaaactccaatccaaacactcact 3436261  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 30877895 - 30877845
Alignment:
Q  8 aaaaagtcttttaaaatcctttgaaaact-tattcaatacacccccctaaa 57  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  30877895 aaaaagtcttttaaaatcctttgaaatctcaattgaatacacccccctaaa 30877845  T

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Target: chr4 (Bit Score: 143; Significance: 2e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 90 - 285
Target Start/End: Original strand, 18062723 - 18062919
Alignment:
Q  90 tcgatattctatcaataaattgaatattctattttcatagtttgtaaatctaaaaaatgaatttctttaagnnnnnnnnnn-gataatatttattccgat 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           | ||||||||||||||||    
T  18062723 tcgatattctatcaataaattgaatattctattttcatagtttgtaaatctaaaaaatgaatttctttaagaaaaaaaaaaaggtaatatttattccgat 18062822  T
Q  189 atactttttccgattactatatccttatattctaatgatatatcatgaatatagatgacatattcttatattctaaggatatgtcatgaatatccat 285  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18062823 atactttttccggttactatatccttatattctaaggatatatcatgaatatacatgacatattcttatattctaaggatatgtcatgaatatccat 18062919  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 8880486 - 8880438
Alignment:
Q  8 aaaaagtcttttaaaatcctttgaaaacttattcaatacacccccctaa 56  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||    
T  8880486 aaaaagtcttttaaaatcctttgaaatctaatccaatacacccccctaa 8880438  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 44646767 - 44646712
Alignment:
Q  5 attaaaaagtcttttaaaatcctttgaaaactt-attcaatacacccccctaaaac 59  Q
    |||||||||||||||||||||  |||||| ||| ||||||||||||||||| ||||    
T  44646767 attaaaaagtcttttaaaatctcttgaaatcttgattcaatacaccccccttaaac 44646712  T

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Target: chr5 (Bit Score: 75; Significance: 6e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 617 - 738
Target Start/End: Original strand, 5029481 - 5029603
Alignment:
Q  617 ttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatcacatcaaaaat-tattggaaagtgagaaa 715  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||   || |||| |||||||||||||||| | ||||||||| |||||||    
T  5029481 ttggaatagcggtggaaagccagcaaacccacgtccacacaaaagctagaattcatagctttgtaaaaatcacatcaaaagtgtattggaaattgagaaa 5029580  T
Q  716 catgatgcaaactccaatccaaa 738  Q
    |||||||||||||||| ||||||    
T  5029581 catgatgcaaactccattccaaa 5029603  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 681 - 746
Target Start/End: Original strand, 9042541 - 9042607
Alignment:
Q  681 aaaaatcacatcaaaa-attattggaaagtgagaaacatgatgcaaactccaatccaaacactcact 746  Q
    |||||||||||||||| |  ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  9042541 aaaaatcacatcaaaagaccattgggaagtgagaaacatgatgcaaactccaatccaagcactcact 9042607  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 612 - 695
Target Start/End: Original strand, 43135775 - 43135858
Alignment:
Q  612 tgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatcacatcaaa 695  Q
    ||||||||||||||||||||| | ||||||||| |||||| | || ||||||||||||| ||| || |  |||||||| |||||    
T  43135775 tgtgtttggaatagcggtggacaaccaccaaacacacgtctagactaaagctagaatttccagcttcgttaaaatcacgtcaaa 43135858  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 6828833 - 6828882
Alignment:
Q  8 aaaaagtcttttaaaatcctttgaaaact-tattcaatacacccccctaa 56  Q
    |||||||||||||||||||||||||| ||  ||| |||||||||||||||    
T  6828833 aaaaagtcttttaaaatcctttgaaatctcaattgaatacacccccctaa 6828882  T

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Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 16141593 - 16141663
Alignment:
Q  90 tcgatattctatcaataaattgaatattctattttcatagtttgtaaatctaaaaaatgaatttctttaag 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16141593 tcgatattctatcaataaattgaatattctattttcatagtttgtaaatctaaaaaatgaatttctttaag 16141663  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 612 - 746
Target Start/End: Original strand, 35698705 - 35698840
Alignment:
Q  612 tgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatcacatcaaaaat-tattggaaagtg 710  Q
    ||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||  |  |||  ||||||||||| |||| |  |||||||||||    
T  35698705 tgtgtgtggaatagcggtggaaagccaccaaacccacgcccacacaaacgctagaatttctaactttctaaaaatcacattaaaagtacattggaaagtg 35698804  T
Q  711 agaaacatgatgcaaactccaatccaaacactcact 746  Q
    ||||| ||||  || |||||||||||||||||||||    
T  35698805 agaaatatgacacagactccaatccaaacactcact 35698840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 700 - 740
Target Start/End: Complemental strand, 14802237 - 14802198
Alignment:
Q  700 attggaaagtgagaaacatgatgcaaactccaatccaaaca 740  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  14802237 attggaaagtgagaaacatgatgcaaac-ccaatccaaaca 14802198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 2288510 - 2288453
Alignment:
Q  2 ataattaaaaagtcttttaaaatcctttgaaaact-tattcaatacacccccctaaaa 58  Q
    ||||| ||||||||||||||||||| |||||  ||  |||||||||||||||||||||    
T  2288510 ataataaaaaagtcttttaaaatcccttgaattctcaattcaatacacccccctaaaa 2288453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 699 - 744
Target Start/End: Complemental strand, 15361336 - 15361291
Alignment:
Q  699 tattggaaagtgagaaacatgatgcaaactccaatccaaacactca 744  Q
    ||||| ||||||| ||| |||||||||||||||||| |||||||||    
T  15361336 tattgaaaagtgaaaaatatgatgcaaactccaatcaaaacactca 15361291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 6e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 34883404 - 34883468
Alignment:
Q  96 ttctatcaataaattgaatattctattttcatagtttgtaaatctaaaaaatgaatttctttaag 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34883404 ttctatcaataaattgaatattctattttcatagtttgtaaatctaaaaaatgaatttctttaag 34883468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 604 - 689
Target Start/End: Original strand, 54581497 - 54581582
Alignment:
Q  604 acttatgttgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatcac 689  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||| || ||||||||||||| ||| |||| |||||||||    
T  54581497 acttatgttgtgtttggaatagcggtggacagccaccaaatacacgtccagactaaagctagaatttccagctttgtaaaaatcac 54581582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 700 - 743
Target Start/End: Complemental strand, 26828785 - 26828742
Alignment:
Q  700 attggaaagtgagaaacatgatgcaaactccaatccaaacactc 743  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  26828785 attggaaagtgagaaacatgatgcaaactcgaatccaaacactc 26828742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 706 - 741
Target Start/End: Original strand, 24257338 - 24257373
Alignment:
Q  706 aagtgagaaacatgatgcaaactccaatccaaacac 741  Q
    ||||||||||||||||||||||||||||||||||||    
T  24257338 aagtgagaaacatgatgcaaactccaatccaaacac 24257373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 19893497 - 19893444
Alignment:
Q  5 attaaaaagtcttttaaaatcctttgaaaactt-attcaatacacccccctaaa 57  Q
    |||||||||||||||||||||| || ||| ||| ||||||||||||| ||||||    
T  19893497 attaaaaagtcttttaaaatcccttaaaatcttaattcaatacacccacctaaa 19893444  T

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