View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11471_low_11 (Length: 384)
Name: NF11471_low_11
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 38453263 - 38452902
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38453263 |
tcatgatcatcgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccata |
38453164 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38453163 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
38453064 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38453063 |
tagagtatgatcatatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccttgttaacaacaacaaggcatcttttgattc |
38452964 |
T |
|
| Q |
315 |
tttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38452963 |
tttaacttccgtcgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
38452902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 38169647 - 38170008
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38169647 |
tcatgatcatcttcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacg |
38169746 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
38169747 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccaatttataacgaagaagatctcaatcatattatgt |
38169846 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38169847 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattc |
38169946 |
T |
|
| Q |
315 |
tttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
38169947 |
tttggcttccgtcaaatcgctcaatttcgttcgagtttctccttttgaagaatattcatctc |
38170008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 38182953 - 38182592
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38182953 |
tcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacg |
38182854 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38182853 |
ttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgt |
38182754 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38182753 |
tcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattc |
38182654 |
T |
|
| Q |
315 |
tttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
38182653 |
tttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38182592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 38185436 - 38185797
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38185436 |
tcatgatcatcgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacg |
38185535 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38185536 |
ttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgt |
38185635 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38185636 |
tcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattc |
38185735 |
T |
|
| Q |
315 |
tttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
38185736 |
tttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38185797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 38188178 - 38188539
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38188178 |
tcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacg |
38188277 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38188278 |
ttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgt |
38188377 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38188378 |
tcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattc |
38188477 |
T |
|
| Q |
315 |
tttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
38188478 |
tttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38188539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 38210179 - 38209818
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38210179 |
tcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacg |
38210080 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38210079 |
ttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgt |
38209980 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38209979 |
tcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattc |
38209880 |
T |
|
| Q |
315 |
tttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
38209879 |
tttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38209818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 38212921 - 38212560
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38212921 |
tcatgatcatcgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacg |
38212822 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38212821 |
ttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgt |
38212722 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38212721 |
tcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattc |
38212622 |
T |
|
| Q |
315 |
tttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
38212621 |
tttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38212560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 38215403 - 38215764
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38215403 |
tcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacg |
38215502 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38215503 |
ttcatgttttccgatgtttgtttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgt |
38215602 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38215603 |
tcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattc |
38215702 |
T |
|
| Q |
315 |
tttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
38215703 |
tttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38215764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 38443232 - 38443540
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38443232 |
tcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttcctca |
38443331 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgt |
214 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38443332 |
ttcatggtttccaatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccagtttataacgaagaagatctcaatcatatgatgt |
38443431 |
T |
|
| Q |
215 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443432 |
tcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattc |
38443531 |
T |
|
| Q |
315 |
tttggcttc |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
38443532 |
tttggcttc |
38443540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 197 - 376
Target Start/End: Original strand, 38219947 - 38220126
Alignment:
| Q |
197 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
38219947 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaa |
38220046 |
T |
|
| Q |
297 |
caaggcatcttttgattctttggcttccgtcgaatcgctcaattccgttcatgtttctccttttgaagaatattcatctc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
38220047 |
caaggcatcttttgattctttggcttccatcaaatcgctcaattccgttcaagtctctccttttgaagaatattcatctc |
38220126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 38183327 - 38183476
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38183327 |
tcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcatcgtcgatcgtaatatcaacttctttgacctcatggcaaagctttccacg |
38183426 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183427 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattt |
38183476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 38215030 - 38214881
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccact |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38215030 |
tcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcatcgtcgatcgtaatatcaacttctttgacctcatggcaaagctttccacg |
38214931 |
T |
|
| Q |
115 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214930 |
ttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattt |
38214881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 142 - 324
Target Start/End: Original strand, 38155845 - 38156027
Alignment:
| Q |
142 |
tatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcactttt |
241 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||| | ||| ||||| |
|
|
| T |
38155845 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgctttt |
38155944 |
T |
|
| Q |
242 |
cacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttcc |
324 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
38155945 |
cacgaaagcctgcaaagttgagggtcttcctcttccctctccctattagcaacaacaaggcatcttttaattctttggcttcc |
38156027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 38197457 - 38197370
Alignment:
| Q |
15 |
tcatgatcatcgtctttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggca |
102 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38197457 |
tcatgatcatcttcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggca |
38197370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 28340977 - 28341142
Alignment:
| Q |
70 |
gatcgtaatatcaacttctccgacctcatggcaaagctttccactttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagattttgatg |
169 |
Q |
| |
|
|||||||||||||| |||||||||||| | | ||||||||| | ||||||| | |||| |||||||||||| || |||| |||||||||| || ||| |
|
|
| T |
28340977 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctccctggtgaagatcttaatg |
28341076 |
T |
|
| Q |
170 |
ctttgatcccggtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
235 |
Q |
| |
|
||||||| | ||| | ||||| || |||||| | |||||||| ||||||||||||||||||||| |
|
|
| T |
28341077 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtc |
28341142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 293
Target Start/End: Complemental strand, 28382845 - 28382583
Alignment:
| Q |
31 |
tattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccactttcatgttttccgatg |
130 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||||||||| |||||| ||||| |||||| | ||||| || | | | |||||| ||| |
|
|
| T |
28382845 |
tattcctacatcggcggtgacaccaaaatcctcaccgtcgatcgtagtatcaaattctctagcctcattgagaagctatcatcaatgacgttttctgatc |
28382746 |
T |
|
| Q |
131 |
tttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtat |
230 |
Q |
| |
|
||||| | |||||||||| | ||||| ||| | ||| |||||||| | || | ||||| || |||||| || ||||||||| ||||||||| | || |
|
|
| T |
28382745 |
tttgcctaaagtatcaacaacctggtggagagctcgattctttgatctcagtattcaacgatgacgatctcgatagtatgatgtttgagtatgattgcat |
28382646 |
T |
|
| Q |
231 |
gtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttccctgtccctgttaacaa |
293 |
Q |
| |
|
||||| | |||||| || |||||| || ||| ||| || ||||||||| |||| |||||||| |
|
|
| T |
28382645 |
gtgtcgcgtttcacctaaacctgcaaggatgaaggtttttctcttccctctcccagttaacaa |
28382583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 28399764 - 28399582
Alignment:
| Q |
43 |
ggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccactttcatgttttccgatgtttgcttcaagt |
142 |
Q |
| |
|
||||| ||||| | |||| || |||| |||||| ||||||| || ||| ||||| | |||||||||| ||| | |||| ||| | |||||||||||| |
|
|
| T |
28399764 |
ggcggtgacaacataatcgtccccgttgatcgtgatatcaagttttccaacctcgtcacaaagctttctactatgatgtattctaaattttgcttcaagt |
28399665 |
T |
|
| Q |
143 |
atcaactccttggtgaagattttgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgttcgagtatgat |
225 |
Q |
| |
|
||||||| | |||| ||||| | ||| |||||||||| || | ||| | |||||| | || ||||||||||| |||||||| |
|
|
| T |
28399664 |
atcaacttcctggtcaagatctcgatactttgatcccagtcttaaaccaggaagatttggatgatatgatgttcaagtatgat |
28399582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University