View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_low_13 (Length: 333)

Name: NF11471_low_13
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_low_13
NF11471_low_13
[»] chr4 (20 HSPs)
chr4 (13-219)||(34115733-34115939)
chr4 (140-224)||(3168996-3169078)
chr4 (152-220)||(1657650-1657718)
chr4 (162-222)||(30416700-30416760)
chr4 (152-222)||(4634249-4634319)
chr4 (152-222)||(9661819-9661889)
chr4 (152-224)||(1646017-1646089)
chr4 (152-220)||(3673589-3673657)
chr4 (152-224)||(16991838-16991910)
chr4 (152-224)||(54420788-54420860)
chr4 (151-221)||(43156741-43156812)
chr4 (132-214)||(46729005-46729085)
chr4 (183-224)||(28588558-28588599)
chr4 (183-224)||(23067924-23067965)
chr4 (183-224)||(41486572-41486613)
chr4 (154-222)||(14542590-14542658)
chr4 (152-220)||(51646059-51646127)
chr4 (119-224)||(6408374-6408478)
chr4 (168-222)||(7242847-7242901)
chr4 (183-224)||(52555797-52555838)
[»] chr8 (20 HSPs)
chr8 (140-224)||(9269977-9270059)
chr8 (156-224)||(10042731-10042799)
chr8 (152-224)||(31874050-31874122)
chr8 (152-224)||(284551-284623)
chr8 (152-224)||(631254-631326)
chr8 (152-224)||(817066-817138)
chr8 (183-224)||(9992662-9992703)
chr8 (152-220)||(32061760-32061828)
chr8 (152-224)||(36545857-36545929)
chr8 (132-222)||(16937417-16937505)
chr8 (140-214)||(23766698-23766770)
chr8 (162-220)||(37658942-37659000)
chr8 (154-222)||(44295284-44295352)
chr8 (171-224)||(7269540-7269593)
chr8 (183-224)||(8054884-8054925)
chr8 (118-218)||(14115875-14115972)
chr8 (152-217)||(14327445-14327510)
chr8 (162-222)||(32256799-32256860)
chr8 (162-222)||(15665515-15665575)
chr8 (168-224)||(26937507-26937563)
[»] chr7 (21 HSPs)
chr7 (152-224)||(47749700-47749772)
chr7 (152-224)||(24470361-24470433)
chr7 (152-224)||(24475309-24475381)
chr7 (176-224)||(43807226-43807274)
chr7 (152-222)||(49166893-49166963)
chr7 (152-224)||(40775233-40775305)
chr7 (153-220)||(29804756-29804823)
chr7 (156-223)||(35141830-35141897)
chr7 (138-224)||(8319267-8319352)
chr7 (152-224)||(8611698-8611770)
chr7 (152-220)||(21329376-21329443)
chr7 (162-222)||(28015332-28015392)
chr7 (172-220)||(38649438-38649486)
chr7 (183-222)||(30992901-30992940)
chr7 (162-224)||(23732469-23732531)
chr7 (183-221)||(24045311-24045349)
chr7 (162-220)||(41748581-41748639)
chr7 (183-224)||(25855296-25855337)
chr7 (183-220)||(26017738-26017775)
chr7 (183-224)||(47156393-47156434)
chr7 (184-220)||(14734130-14734166)
[»] chr3 (21 HSPs)
chr3 (152-224)||(20201134-20201206)
chr3 (152-224)||(20203316-20203388)
chr3 (152-224)||(50519756-50519828)
chr3 (152-222)||(1165474-1165544)
chr3 (123-224)||(22843990-22844089)
chr3 (152-224)||(22286825-22286897)
chr3 (152-224)||(35501835-35501906)
chr3 (162-221)||(913397-913456)
chr3 (162-224)||(2598059-2598121)
chr3 (152-222)||(40462073-40462143)
chr3 (152-224)||(41882484-41882556)
chr3 (118-224)||(21803464-21803568)
chr3 (152-222)||(43029649-43029719)
chr3 (140-224)||(25374146-25374227)
chr3 (152-220)||(37051590-37051658)
chr3 (118-224)||(1220291-1220395)
chr3 (162-221)||(42106087-42106146)
chr3 (175-224)||(7656553-7656600)
chr3 (151-224)||(43242776-43242849)
chr3 (191-224)||(45664234-45664267)
chr3 (183-224)||(53426801-53426842)
[»] chr2 (25 HSPs)
chr2 (152-224)||(44167785-44167857)
chr2 (118-222)||(40125323-40125425)
chr2 (162-222)||(10589014-10589074)
chr2 (152-223)||(25516460-25516531)
chr2 (152-222)||(3390398-3390468)
chr2 (154-224)||(5930391-5930461)
chr2 (152-222)||(25771411-25771481)
chr2 (152-220)||(6089859-6089927)
chr2 (152-224)||(27191411-27191483)
chr2 (152-224)||(27841225-27841297)
chr2 (152-224)||(41176828-41176900)
chr2 (152-223)||(26491269-26491340)
chr2 (183-224)||(7640432-7640473)
chr2 (162-223)||(29812692-29812753)
chr2 (152-224)||(3464925-3464997)
chr2 (139-222)||(27024217-27024298)
chr2 (152-220)||(37883619-37883687)
chr2 (152-222)||(3602951-3603021)
chr2 (162-224)||(42105828-42105890)
chr2 (183-224)||(16880035-16880076)
chr2 (113-224)||(41841878-41841988)
chr2 (152-224)||(43566843-43566913)
chr2 (183-222)||(15674052-15674091)
chr2 (152-223)||(36507897-36507968)
chr2 (132-224)||(13268520-13268612)
[»] scaffold1294 (1 HSPs)
scaffold1294 (132-224)||(728-818)
[»] chr6 (14 HSPs)
chr6 (152-224)||(16913294-16913366)
chr6 (152-221)||(4663899-4663968)
chr6 (183-224)||(19759785-19759826)
chr6 (179-224)||(20845001-20845046)
chr6 (189-224)||(548941-548976)
chr6 (118-224)||(32574387-32574491)
chr6 (152-222)||(12576556-12576626)
chr6 (183-223)||(32804291-32804331)
chr6 (189-224)||(15128225-15128260)
chr6 (152-222)||(10744545-10744615)
chr6 (190-224)||(32457650-32457684)
chr6 (156-217)||(7049217-7049278)
chr6 (152-224)||(31747926-31747996)
chr6 (152-224)||(891554-891626)
[»] chr5 (19 HSPs)
chr5 (152-224)||(34893992-34894064)
chr5 (151-224)||(37424958-37425031)
chr5 (139-222)||(6887256-6887337)
chr5 (140-224)||(4070512-4070592)
chr5 (156-220)||(34950446-34950511)
chr5 (152-224)||(28618570-28618642)
chr5 (162-221)||(8812231-8812290)
chr5 (183-222)||(18472803-18472842)
chr5 (153-223)||(19646118-19646188)
chr5 (152-222)||(31645795-31645865)
chr5 (152-222)||(33486648-33486718)
chr5 (152-222)||(41554452-41554522)
chr5 (118-222)||(2415334-2415436)
chr5 (183-224)||(6647989-6648030)
chr5 (183-222)||(29310427-29310466)
chr5 (178-224)||(41358030-41358077)
chr5 (134-224)||(15710490-15710580)
chr5 (179-224)||(4727004-4727049)
chr5 (183-224)||(9035024-9035065)
[»] scaffold0045 (1 HSPs)
scaffold0045 (152-224)||(9724-9796)
[»] chr1 (21 HSPs)
chr1 (152-224)||(6212962-6213034)
chr1 (152-222)||(22344990-22345060)
chr1 (183-224)||(44562825-44562866)
chr1 (152-204)||(29067022-29067074)
chr1 (118-224)||(14717319-14717422)
chr1 (134-224)||(52839373-52839461)
chr1 (161-224)||(52839496-52839559)
chr1 (183-224)||(5832230-5832271)
chr1 (183-224)||(38646581-38646622)
chr1 (184-220)||(13691838-13691874)
chr1 (152-215)||(30853868-30853931)
chr1 (194-224)||(23320448-23320478)
chr1 (152-222)||(44514068-44514138)
chr1 (183-224)||(630861-630902)
chr1 (156-220)||(2875646-2875710)
chr1 (168-224)||(10877327-10877384)
chr1 (162-223)||(17579744-17579805)
chr1 (183-224)||(35077966-35078007)
chr1 (183-215)||(33703594-33703626)
chr1 (168-224)||(46589158-46589213)
chr1 (168-212)||(48655154-48655198)
[»] scaffold0665 (1 HSPs)
scaffold0665 (118-218)||(1174-1271)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 34115939 - 34115733
Alignment:
Q  13 agaaatagacaaataatatcaaggttttaaagaatggggggaactagagctagcccacactacacttctacaaaaactagaatattagataagatagcga 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  34115939 agaaatagacaaatcatatcaaggttttaaagaatggggggaactagagctagcccacactacacttctacaaaaactagaatactagacaagatagcga 34115840  T
Q  113 tttcattctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcac 212  Q
    |  |||||| ||| ||||||||||  ||||| | || |||||||||||||||||  |||||| |||| ||||||| ||||||||||||||||||||||||    
T  34115839 tgacattctttctcgtcaaccgtcaccaaaattttaatttttcttctcattcatctaccaaagagagataatttagggtcaatttttgacccaaaatcac 34115740  T
Q  213 ccctcta 219  Q
    |||||||    
T  34115739 ccctcta 34115733  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 3168996 - 3169078
Alignment:
Q  140 aaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||||||||  |||  ||||||||||||| |||||| |||||  ||||||| |||||||||||||||||||||||||||    
T  3168996 aaaactctagttttt--tcttcttcattcaccaaagagaggtgatttagagtcaattattgacccaaaatcacccctctaactcg 3169078  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 1657718 - 1657650
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||||||| ||||| || |||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  1657718 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaa 1657650  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 30416760 - 30416700
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| |||||||||| ||||||||||||||||||||||| |||||||||| |||||||||    
T  30416760 ttcatccaccaaaaaggggtaatttatggtcaatttttgaaccaaaatcacacctctaact 30416700  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 4634249 - 4634319
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||||||||||||||    
T  4634249 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaact 4634319  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 9661819 - 9661889
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||||||||||||||    
T  9661819 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 9661889  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 1646089 - 1646017
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||  ||||||||||||| |||| | ||||| ||| |||| |||||||||||||||||||||||||||    
T  1646089 tttcttcttcttcattcaccaaagagagatgatttagggttaattgttgacccaaaatcacccctctaactcg 1646017  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 3673589 - 3673657
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    |||||||||||| || ||||||| || ||| ||||| |||||||||||||||| |||||||||||||||    
T  3673589 tttcttctcatttatccaccaaagaggggtgatttagggtcaatttttgaccccaaatcacccctctaa 3673657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 16991838 - 16991910
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| || |||| || ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  16991838 tttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcacccatctaactcg 16991910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 54420860 - 54420788
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| |  ||| ||||| |||||||||||||||||||||||| |||||||||||    
T  54420860 tttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcactcctctaactcg 54420788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 43156741 - 43156812
Alignment:
Q  151 ttttcttctcattcattcaccaaaaagaggtaatttatgg-tcaatttttgacccaaaatcacccctctaac 221  Q
    |||||||||| ||||| ||||||| || ||| ||||| || |||||||||||||||||||||||||||||||    
T  43156741 ttttcttctccttcatccaccaaagaggggtgatttacgggtcaatttttgacccaaaatcacccctctaac 43156812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 46729085 - 46729005
Alignment:
Q  132 ccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcaccc 214  Q
    ||||| |||||||||||||||||  || | ||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||    
T  46729085 ccgtcatcaaaactctagttttt--tcactttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 46729005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 28588558 - 28588599
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  28588558 atttagggtcaatttttgacccaaaatcacccctctaactcg 28588599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 23067965 - 23067924
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  23067965 atttagggtcaatttttgaccctaaatcacccctctaactcg 23067924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 41486572 - 41486613
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  41486572 atttagggtcaatttttgatccaaaatcacccctctaactcg 41486613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 14542658 - 14542590
Alignment:
Q  154 tcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||| | ||||||||    
T  14542658 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaact 14542590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 51646059 - 51646127
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||||| | ||||| || |||| |||| | ||||||||||||||||| ||| ||||||||||||||||    
T  51646059 tttcttcaccttcatccatcaaagagagatgatttatggtcaatttttaacctaaaatcacccctctaa 51646127  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 6408374 - 6408478
Alignment:
Q  119 tctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaag-aggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    |||||||||| |  |||| |||| ||||||||||  |||||| ||||| ||||||| || |||| ||| | ||||||||||| ||||||||||||| ||     
T  6408374 tctctcttgtgagtcgtcatcaatactctagttt--cttctccttcatccaccaaagaggaggtgattaagggtcaattttttacccaaaatcacctctt 6408471  T
Q  218 taactcg 224  Q
    |||||||    
T  6408472 taactcg 6408478  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 7242901 - 7242847
Alignment:
Q  168 caccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    |||||||||| ||  ||||| |||||||||||||||||||||||||  |||||||    
T  7242901 caccaaaaaggggcgatttagggtcaatttttgacccaaaatcacctttctaact 7242847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 52555838 - 52555797
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| || |||||||||||||||||||||| ||||||||||    
T  52555838 atttagggacaatttttgacccaaaatcacctctctaactcg 52555797  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 9269977 - 9270059
Alignment:
Q  140 aaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||||||  |||||| ||||| ||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||    
T  9269977 aaaactctagttt--cttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcacccctctaactcg 9270059  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 10042731 - 10042799
Alignment:
Q  156 ttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||    
T  10042731 ttctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctctaactcg 10042799  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 31874050 - 31874122
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| || |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  31874050 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaactcg 31874122  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 284623 - 284551
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||||||||| ||| ||| |||||| ||||||| ||||||||||||||||||| ||| || |||||||    
T  284623 tttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcg 284551  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 631254 - 631326
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||||||||| ||| ||| |||||| ||||||| ||||||||||||||||||| ||| || |||||||    
T  631254 tttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcg 631326  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 817066 - 817138
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||||||||| ||| ||| |||||| ||||||| ||||||||||||||||||| ||| || |||||||    
T  817066 tttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcg 817138  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 9992662 - 9992703
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  9992662 atttagggtcaatttttgacccaaaatcacccctctaactcg 9992703  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 32061760 - 32061828
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||||||| ||||| ||||||| || |||| |||| |||||||||||||||| ||||||||| |||||    
T  32061760 tttcttctccttcatccaccaaagaggggtagtttagggtcaatttttgaccccaaatcacccttctaa 32061828  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 36545929 - 36545857
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || | | ||||| ||||||||| |||||||| |||||||||||||||||    
T  36545929 tttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcacccctctaactcg 36545857  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 16937505 - 16937417
Alignment:
Q  132 ccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| ||||||| |||||||  |||| | ||||| ||||||| || ||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  16937505 ccgtcatcaaaaccctagttt--cttcaccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcatccctctaact 16937417  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 23766698 - 23766770
Alignment:
Q  140 aaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcaccc 214  Q
    |||||||||||||  |||||  ||||| ||||||| ||| || ||||| ||||||||||||||||||||||||||    
T  23766698 aaaactctagttt--cttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaatcaccc 23766770  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 37658942 - 37659000
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||| ||||||| || ||| ||||| |||||||||||||| |||||||||||||||||    
T  37658942 ttcatccaccaaagaggggtgatttagggtcaatttttgacacaaaatcacccctctaa 37659000  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 44295284 - 44295352
Alignment:
Q  154 tcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||| | ||||||||    
T  44295284 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaact 44295352  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 7269593 - 7269540
Alignment:
Q  171 caaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||| |||||| |||||  ||||||||||||||| ||||||||| |||||||||    
T  7269593 caaatagaggtgatttagagtcaatttttgaccctaaatcacccttctaactcg 7269540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 8054925 - 8054884
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||||||||||| | ||||||||||||    
T  8054925 atttagggtcaatttttgacccaaaattatccctctaactcg 8054884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 14115972 - 14115875
Alignment:
Q  118 ttctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||||||||| | |||||  | |||||||||||   |||||| ||||| ||||||| |  ||| ||||| ||||||||||||||||||||||| |||||    
T  14115972 ttctctcttgtgagccgtcacctaaactctagtta--cttctctttcatccaccaaagatgggtgattta-ggtcaatttttgacccaaaatcatccctc 14115876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 14327445 - 14327510
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||||||| ||||| ||||||| || |||  |||| |||||||||||||||| || |||||||||    
T  14327445 tttcttctccttcatccaccaaagaggggtggtttagggtcaatttttgaccccaattcacccctc 14327510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 32256860 - 32256799
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttg-acccaaaatcacccctctaact 222  Q
    ||||| ||||||| || ||| ||||| |||||||||||  ||||||||||||||||||||||    
T  32256860 ttcatccaccaaagaggggtgatttagggtcaatttttttacccaaaatcacccctctaact 32256799  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 15665515 - 15665575
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| || |||| || ||| ||||| |||||| ||||||| |||||||||||||||||||    
T  15665515 ttcatccaacaaagaggggtgatttagggtcaacttttgacacaaaatcacccctctaact 15665575  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 26937507 - 26937563
Alignment:
Q  168 caccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||| || ||| ||||| ||| || ||||||| |||||||||||||||||||||    
T  26937507 caccaaagaggggttatttagggttaagttttgactcaaaatcacccctctaactcg 26937563  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 47749700 - 47749772
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  47749700 tttcttctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctctatctcg 47749772  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 24470361 - 24470433
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| || |||||||||||||||||||||||||||||||||    
T  24470361 tttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcg 24470433  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 24475309 - 24475381
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| || |||||||||||||||||||||||||||||||||    
T  24475309 tttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcg 24475381  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 43807274 - 43807226
Alignment:
Q  176 agaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  43807274 agaggtgatttatggtcaatttttgacccaaaatcacctctctaactcg 43807226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 49166893 - 49166963
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| ||||||| |  ||| ||||| ||||||||||||||| ||||||||||||||||||    
T  49166893 tttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcacccctctaact 49166963  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 40775233 - 40775305
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| || |||| || ||| ||||| ||||||||||||| |||||||||||||| |||||||    
T  40775233 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatccaaaatcacccctataactcg 40775305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 29804823 - 29804756
Alignment:
Q  153 ttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||| |||||||| ||||||| || |||  |||| |||||||||||||||| |||||||||||||||    
T  29804823 ttcttttcattcatccaccaaagaggggtggtttagggtcaatttttgaccccaaatcacccctctaa 29804756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 35141897 - 35141830
Alignment:
Q  156 ttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactc 223  Q
    ||||| ||||||||||||| |  ||| ||||| ||||||||||||||| |||||||||| ||||||||    
T  35141897 ttctccttcattcaccaaagaagggtgatttagggtcaatttttgaccaaaaatcacccttctaactc 35141830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 8319267 - 8319352
Alignment:
Q  138 tcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||| |||||||| |||||| || || ||||||| ||  || |||||||||||| ||||||||||||||||||| | |||||||    
T  8319267 tcaaaaccctagtttt-cttctcctttatccaccaaagaggagtgatttatggtcaacttttgacccaaaatcacccatgtaactcg 8319352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 8611770 - 8611698
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||| ||| || ||| ||||| ||||  |||||||||||| |||||||||||||||||    
T  8611770 tttcttctccttcatccacgaaagaggggtgatttagggtctctttttgacccaatatcacccctctaactcg 8611698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 21329443 - 21329376
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    |||||||||||| || ||||||| || |||  |||| |||||||||||||||| |||||||||||||||    
T  21329443 tttcttctcatttatccaccaaagaggggtggtttagggtcaatttttgaccc-aaatcacccctctaa 21329376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 28015332 - 28015392
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| ||| ||| || ||| ||||| ||||||||||||| ||||||||||||||||||||    
T  28015332 ttcatccactaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaact 28015392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 38649486 - 38649438
Alignment:
Q  172 aaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    |||||| ||| |||||  |||||||||||||||||||||||||||||||    
T  38649486 aaaaaggggtgatttagagtcaatttttgacccaaaatcacccctctaa 38649438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 30992940 - 30992901
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  30992940 atttaaggttaatttttgacccaaaatcacccctctaact 30992901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 23732531 - 23732469
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||| |||| || ||| ||||| |||||||||||||| |||||||||  ||||||||||    
T  23732531 ttcattcatcaaagaggggtgatttaaggtcaatttttgactcaaaatcacttctctaactcg 23732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 24045349 - 24045311
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaac 221  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  24045349 atttaaggtcaatttttgacccaaaatcacccgtctaac 24045311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 41748639 - 41748581
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||||||| ||| ||| || ||||| ||||||||||||| |||||||||| |||||||    
T  41748639 ttcattcactaaagagatgtgatttacggtcaatttttgatccaaaatcactcctctaa 41748581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 25855337 - 25855296
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||    
T  25855337 atttagggtcaatttttgatccaaaatcatccctctaactcg 25855296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 26017775 - 26017738
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  26017775 atttatggttaatttttgacctaaaatcacccctctaa 26017738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 47156393 - 47156434
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||    
T  47156393 atttaaggtcaatttttgatccaaaatcatccctctaactcg 47156434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 14734166 - 14734130
Alignment:
Q  184 tttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    |||| |||||||||||||||| |||||||||||||||    
T  14734166 tttagggtcaatttttgaccccaaatcacccctctaa 14734130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 20201206 - 20201134
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  20201206 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcg 20201134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 20203388 - 20203316
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  20203388 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcg 20203316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 50519756 - 50519828
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| |  ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  50519756 tttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcacccctctaactcg 50519828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 1165544 - 1165474
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||||||||||||||    
T  1165544 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 1165474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 22843990 - 22844089
Alignment:
Q  123 tcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    |||||| |||||||  |||||| ||||||| |  |||| |||||||| |||| || | | ||||| ||||||||||||||||||||||||||||||||||    
T  22843990 tcttgtgaaccgtcaccaaaaccctagtttat--tctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcacccctctaact 22844087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 22286897 - 22286825
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  22286897 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattacccctctaactcg 22286825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 35501906 - 35501835
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  35501906 tttcttctccttcatccaccaaagag-ggtgatttagggttaatttttgacccaaaatcacccctctaactcg 35501835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 913456 - 913397
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaac 221  Q
    ||||| ||||||| || ||||||| || ||||||||||||||||||||||||||||||||    
T  913456 ttcatccaccaaagaggggtaattcatagtcaatttttgacccaaaatcacccctctaac 913397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 2598059 - 2598121
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| |||||||||||||| |||||  ||| ||||||||||||||||||| |||||||||||    
T  2598059 ttcatccaccaaaaagaggtgatttaaagtcgatttttgacccaaaatcactcctctaactcg 2598121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 40462143 - 40462073
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| ||||||| || ||| |||||  ||||| |||||||||||||||||||||||||||    
T  40462143 tttcttctctttcatccaccaaagagtggtgatttagagtcaaattttgacccaaaatcacccctctaact 40462073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 41882556 - 41882484
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| || |||| ||  || ||||| ||||||||||||||||||||| ||||||||||||||    
T  41882556 tttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattacccctctaactcg 41882484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 21803464 - 21803568
Alignment:
Q  118 ttctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||||||||| | |||||  |||||| |||||||  |||||| |||||  |||||| ||  || ||| |  ||||||||||||||||||||||||||||    
T  21803464 ttctctcttgtgagccgtcaccaaaaccctagttt--cttctccttcatctaccaaagaggagtgattcagtgtcaatttttgacccaaaatcacccctc 21803561  T
Q  218 taactcg 224  Q
    |||||||    
T  21803562 taactcg 21803568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 43029649 - 43029719
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| || |||| || ||| ||||| | ||| ||||||||||||||||||||||||||||    
T  43029649 tttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcacccctctaact 43029719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 25374227 - 25374146
Alignment:
Q  140 aaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||||||  ||| || ||||||||| || ||| ||| ||||| ||| ||||||||||| ||||||||||||||||||||    
T  25374227 aaaactctagttt--cttttccttcattcacaaagaag-ggtgatttagggttaatttttgacctaaaatcacccctctaactcg 25374146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 37051590 - 37051658
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||||||| ||||| ||||||| || | | ||||| ||||||||||||||||  ||||||||||||||    
T  37051590 tttcttctctttcatccaccaaagagggatgatttagggtcaatttttgaccctgaatcacccctctaa 37051658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 1220395 - 1220291
Alignment:
Q  118 ttctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    |||| |||||| |||| |||||||||||||| |||  |||||| ||||   | |||| || ||| ||||| | |||||||||||  ||||||||||||||    
T  1220395 ttctttcttgtgaaccatcgtcaaaactctaattt--cttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctc 1220298  T
Q  218 taactcg 224  Q
    |||||||    
T  1220297 taactcg 1220291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 42106087 - 42106146
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaac 221  Q
    ||||| ||||||| || ||| ||||| ||||||||||||||| |||||||||| ||||||    
T  42106087 ttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaatcacccatctaac 42106146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 7656600 - 7656553
Alignment:
Q  175 aagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  7656600 aagaggtaatttagggtcaatttttgaccc-aaatca-ccctctaactcg 7656553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 43242776 - 43242849
Alignment:
Q  151 ttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||| |||||||| |||| |  ||| ||||| ||||| |||||||| ||||||||||| | |||||||    
T  43242776 ttttcttctccttcattcatcaaataagggtgatttagggtcagtttttgacacaaaatcacccatttaactcg 43242849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 45664234 - 45664267
Alignment:
Q  191 tcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||| |||||||||||||||||||||||||||||    
T  45664234 tcaaattttgacccaaaatcacccctctaactcg 45664267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 53426801 - 53426842
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||| || |||||||||||||||||||||    
T  53426801 atttagggtcaattttttacgcaaaatcacccctctaactcg 53426842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 44167857 - 44167785
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| || |||||||||||||||||||||||||||||||||||||||    
T  44167857 tttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcacccctctaactcg 44167785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 40125323 - 40125425
Alignment:
Q  118 ttctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||||||||| | ||||| |||||||  ||||||  |||||| ||||| ||||||| || ||| ||||| ||| |||||||||||||||||||||||||    
T  40125323 ttctctcttgtgagccgtcatcaaaaccttagttt--cttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcacccctc 40125420  T
Q  218 taact 222  Q
    |||||    
T  40125421 taact 40125425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 10589014 - 10589074
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||    
T  10589014 ttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 10589074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 25516460 - 25516531
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactc 223  Q
    ||||||||| ||||| ||||||| || ||| ||||| ||||||| |||||||||||||||||||||||||||    
T  25516460 tttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcacccctctaactc 25516531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 3390398 - 3390468
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||||||||||||||    
T  3390398 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 3390468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 5930391 - 5930461
Alignment:
Q  154 tcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||| ||||| ||||||| |||||| ||||| ||| ||||||||||||||||||| ||||||||||||    
T  5930391 tcttctccttcatccaccaaagagaggtgatttagggttaatttttgacccaaaatcatccctctaactcg 5930461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 25771411 - 25771481
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||||||||||||||    
T  25771411 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 25771481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 6089859 - 6089927
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||||||||||||    
T  6089859 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaa 6089927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 27191483 - 27191411
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || | | ||||| |||||||||||||||| |||||||||||||||||||    
T  27191483 tttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcg 27191411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 27841297 - 27841225
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || | | ||||| |||||||||||||||| |||||||||||||||||||    
T  27841297 tttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcg 27841225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 41176828 - 41176900
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| |||||||||||||||||||| ||||| |||||||||    
T  41176828 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccacccatctaactcg 41176900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 26491269 - 26491340
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactc 223  Q
    |||||||||  |||| ||||||| || ||||||||| | |||||||||||||||||||||||||| ||||||    
T  26491269 tttcttctccatcatccaccaaagaggggtaatttaagttcaatttttgacccaaaatcacccctttaactc 26491340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 7640473 - 7640432
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7640473 atttagggtcaatttttgacccaaaatcacccctctaactcg 7640432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 29812753 - 29812692
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactc 223  Q
    ||||| || |||| |||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  29812753 ttcatccatcaaagagaggtgatttagggtcaatttttgacacaaaatcacccctctaactc 29812692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 3464925 - 3464997
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| ||||||||||||| ||||||||||| | ||||||||    
T  3464925 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcaccacactaactcg 3464997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 27024298 - 27024217
Alignment:
Q  139 caaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||||||||  |||||| ||||| || |||| |  ||| ||||| ||||| ||||||||||||||||||||||||||||    
T  27024298 caaaactctagttt--cttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcacccctctaact 27024217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 37883619 - 37883687
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||||||| ||||| ||||||| || ||| ||||| ||||||||||| | ||||||||||||||||||    
T  37883619 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttaatccaaaatcacccctctaa 37883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 3602951 - 3603021
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| || |||| |  ||| |||||||||||| ||||||| |||||||||||||||||||    
T  3602951 tttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactcaaaatcacccctctaact 3603021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 42105890 - 42105828
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||| || |||  |||| ||||||||||||||||||||||||| ||||||||||    
T  42105890 ttcatccaccaaagaggggtgctttagggtcaatttttgacccaaaatcaccactctaactcg 42105828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 16880076 - 16880035
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  16880076 atttttggtcaatttttgacccaaaatcacccctctcactcg 16880035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 41841878 - 41841988
Alignment:
Q  113 tttcattctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgaccc-aaaatca 211  Q
    ||||||||| | |||| |||| ||  ||||||||||||||||  |||| ||||| || || | || | | |||||||||||||||||||||| |||||||    
T  41841878 tttcattcttttttgtgaaccatcaccaaaactctagttttt--tctccttcatccatcatagagggttgatttatggtcaatttttgacccaaaaatca 41841975  T
Q  212 cccctctaactcg 224  Q
    ||||| |||||||    
T  41841976 cccctttaactcg 41841988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 43566843 - 43566913
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||| | ||||||||||||||||||||||| ||||||||||||    
T  43566843 tttcttctccttcatccaccaaagaggggtgatt-agggtcaatttttgacccaaaatca-ccctctaactcg 43566913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 15674091 - 15674052
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  15674091 atttagggtcaatttttgacccaaaatcactcctctaact 15674052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 36507897 - 36507968
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactc 223  Q
    ||||||||| ||||| ||||||| |  ||| | ||| ||||||||||||||||||||||||| |||| ||||    
T  36507897 tttcttctccttcatccaccaaagaatggtgacttagggtcaatttttgacccaaaatcacctctctgactc 36507968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 13268520 - 13268612
Alignment:
Q  132 ccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatca-cccctctaactcg 224  Q
    |||||||||||| |||||||||| | ||  ||||| ||  ||| || ||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  13268520 ccgtcgtcaaaattctagtttttttcctgcttcatccattaaagaggggtgatttatggtc-atttttgaaccaaaatcaccccctctaactcg 13268612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 728 - 818
Alignment:
Q  132 ccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| |||||||||||||||  |||||| ||||| ||||||||||| || ||||| ||||||||||||||| ||||||| | ||||||||||    
T  728 ccgtcatcaaaactctagttt--cttctccttcatccaccaaaaagatgtgatttaaggtcaatttttgaccaaaaatcatcactctaactcg 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 16913294 - 16913366
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || ||| ||||| |||||||||||||||| |||||||||||||||||||    
T  16913294 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcacccctctaactcg 16913366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 4663968 - 4663899
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaac 221  Q
    ||||||||| ||||| ||||||| || ||| |||   |||||||||||||||||||||||||||||||||    
T  4663968 tttcttctccttcatccaccaaagaggggtgattgtgggtcaatttttgacccaaaatcacccctctaac 4663899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 19759785 - 19759826
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  19759785 atttagggtcaatttttgacccaaaatcacccctctaactcg 19759826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 20845001 - 20845046
Alignment:
Q  179 ggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  20845001 ggtaattcaaggtcaatttttgacccaaaatcacccctctaactcg 20845046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 548976 - 548941
Alignment:
Q  189 ggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  548976 ggtcaatttttgacccaaaatcacccctctaactcg 548941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 32574387 - 32574491
Alignment:
Q  118 ttctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||||||||| | |||||  |||||| |||  |||||||||| ||||| ||||||| | ||||  ||||  |||||||||||||||||||| | |||||    
T  32574387 ttctctcttgtgagccgtcaccaaaacccta--ttttcttctccttcatccaccaaatataggtgttttagagtcaatttttgacccaaaattaaccctc 32574484  T
Q  218 taactcg 224  Q
    |||||||    
T  32574485 taactcg 32574491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 12576626 - 12576556
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    |||||| || ||||| ||| ||| || ||| ||||| |||||||||||||||| |||||||||||||||||    
T  12576626 tttcttttccttcatccacgaaagaggggtgatttagggtcaatttttgaccctaaatcacccctctaact 12576556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 32804291 - 32804331
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactc 223  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  32804291 atttagggtcaatttttgacccaaaatcacccatctaactc 32804331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 15128260 - 15128225
Alignment:
Q  189 ggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||||| |||||||||||||||||||||||    
T  15128260 ggtcaatttttgtcccaaaatcacccctctaactcg 15128225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 10744545 - 10744615
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||| | ||||| ||||||| |  ||| ||||| |||||| ||||||||||||||||| |||||||||    
T  10744545 tttcttcaccttcatccaccaaagatgggtgatttagggtcaacttttgacccaaaatcactcctctaact 10744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 32457650 - 32457684
Alignment:
Q  190 gtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||||||||||||||||||| |||||||||    
T  32457650 gtcaatttttgacccaaaatcacccatctaactcg 32457684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 7049217 - 7049278
Alignment:
Q  156 ttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||| ||||| ||||||| || ||| ||||| |||||| ||||||| ||||||||||||||    
T  7049217 ttctccttcatccaccaaagaggggtgatttagggtcaacttttgactcaaaatcacccctc 7049278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 31747926 - 31747996
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||||||||| | ||||| |||| | ||||| |||||||||||||||  |||  ||||||||||||||    
T  31747926 tttcttctcattcatccgccaaagagagatgatttagggtcaatttttgacc--aaaagacccctctaactcg 31747996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 891554 - 891626
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||  ||| |||||| ||| | |||| |||||||||||||||| |||||| |||||||    
T  891554 tttcttctccttcatccattaaagagaggtgattaagggtcgatttttgacccaaaattacccctataactcg 891626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 34894064 - 34893992
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| || |||| || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  34894064 tttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcacccctctaactcg 34893992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 37424958 - 37425031
Alignment:
Q  151 ttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||| || ||||| ||||||| || ||| ||||||||||||||| |||||||||||||| |||||||||||    
T  37424958 ttttcttttccttcatccaccaaagaggggtgatttatggtcaatttctgacccaaaatcacgcctctaactcg 37425031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 6887337 - 6887256
Alignment:
Q  139 caaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||||||||  |||||| ||||| || |||| || ||| ||||| ||||||||||| ||||||||||||||||||||||    
T  6887337 caaaactctagttt--cttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcacccctctaact 6887256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 4070512 - 4070592
Alignment:
Q  140 aaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||||||  |||||| ||||| |||||||||| ||| ||||| ||||| |||||||||||||||||||||||| |||||    
T  4070512 aaaactctagttt--cttctc-ttcatccaccaaaaaggggtgatttagggtca-tttttgacccaaaatcacccctctgactcg 4070592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 34950446 - 34950511
Alignment:
Q  156 ttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatca-cccctctaa 220  Q
    ||||||||||| ||||||| ||||||  ||||||||||||| |||||||||||||| |||||||||    
T  34950446 ttctcattcatccaccaaagagaggtggtttatggtcaattcttgacccaaaatcatcccctctaa 34950511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 28618570 - 28618642
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| |||||   ||||| || ||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  28618570 tttcttctccttcatcagccaaagaggggtgatttaaggtcaatttttaacccaaaatcacccctctaactcg 28618642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 8812290 - 8812231
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaac 221  Q
    ||||| |||||||||| ||| || || ||||||||||| |||||||||||||||||||||    
T  8812290 ttcatccaccaaaaaggggtgatatagggtcaatttttaacccaaaatcacccctctaac 8812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 18472842 - 18472803
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  18472842 atttagggtcaatttttgacccaaaatcacccctctaact 18472803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 19646188 - 19646118
Alignment:
Q  153 ttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactc 223  Q
    |||||||| |||||  |||||| || |||  |||| ||||||| |||||||||||||||||||||||||||    
T  19646188 ttcttctccttcatcgaccaaagaggggtggtttaaggtcaatgtttgacccaaaatcacccctctaactc 19646118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 31645795 - 31645865
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| ||  ||| || ||| ||||| ||||||||||||| ||||||||||||||||||||    
T  31645795 tttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaact 31645865  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 33486718 - 33486648
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||| | ||||| ||| ||| || ||| ||||| |||||||||||||||||||||||||| |||||||    
T  33486718 tttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacccatctaact 33486648  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 41554452 - 41554522
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||| | |||||||| |||| || ||| ||||| | ||||||||||| ||||||||||||||||||||    
T  41554452 tttcttcaccttcattcatcaaagaggggtgatttaggatcaatttttgatccaaaatcacccctctaact 41554522  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 2415334 - 2415436
Alignment:
Q  118 ttctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||||||||| | ||||| ||||||| |||||||   |||   ||||| || |||| | |||| ||||| |||||||||||||||||||||||||| ||    
T  2415334 ttctctcttgtgagccgtcatcaaaaccctagtttaatttcc--ttcatccatcaaagataggtgatttagggtcaatttttgacccaaaatcacccttc 2415431  T
Q  218 taact 222  Q
    |||||    
T  2415432 taact 2415436  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 6648030 - 6647989
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  6648030 atttatggtcaaattttgacccaaaatcactcctctaactcg 6647989  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 29310466 - 29310427
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  29310466 atttagggtcaatttttgatccaaaatcacccctctaact 29310427  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 41358030 - 41358077
Alignment:
Q  178 aggtaatttatggtcaatttttgacccaaaatca-cccctctaactcg 224  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  41358030 aggtgatttagggtcaatttttgacccaaaatcaccccctctaactcg 41358077  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 15710490 - 15710580
Alignment:
Q  134 gtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttg--acccaaaatcacccctctaactcg 224  Q
    |||||||||||||||||||  ||| || ||||| || |||| |  ||| |||||||||||||||||   | ||||||||||||||||||||||    
T  15710490 gtcgtcaaaactctagttt--cttttccttcatccatcaaagatgggtgatttatggtcaattttttttatccaaaatcacccctctaactcg 15710580  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 4727049 - 4727004
Alignment:
Q  179 ggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||||||||||||||||||||| || | |||||||    
T  4727049 ggtaatttagggtcaatttttgacccaaaatcatccatataactcg 4727004  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 9035065 - 9035024
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||| |||||||||||| |||||||| ||||||||||||    
T  9035065 atttatgatcaatttttgactcaaaatcatccctctaactcg 9035024  T

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Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 9796 - 9724
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||||| ||||||| || | | ||||| |||||||||||||||||||||||| |||||||||||    
T  9796 tttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcactcctctaactcg 9724  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 6213034 - 6212962
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||||| ||| | || |||| || ||| |||||||||||||||||||||||||||||| |||||||||||    
T  6213034 tttcttctccttcgtccatcaaagaggggtgatttatggtcaatttttgacccaaaatcacacctctaactcg 6212962  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 22345060 - 22344990
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||||| ||||| || |||| || ||| ||||| | ||||||||||||||||||||||||||||||||    
T  22345060 tttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcacccctctaact 22344990  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 44562866 - 44562825
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  44562866 atttagggtcaatttttgacccaaaatcacccctctaactcg 44562825  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 29067022 - 29067074
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgaccc 204  Q
    |||||||||||||||| | |||| |||||| ||||||||||||||||||||||    
T  29067022 tttcttctcattcatttatcaaatagaggtgatttatggtcaatttttgaccc 29067074  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 14717422 - 14717319
Alignment:
Q  118 ttctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||||||||| | |||||  ||||||||||||||  |||||| ||||| ||||||| || ||| ||||| ||||||||||||||  ||| ||| |||||    
T  14717422 ttctctcttgtgagccgtcaccaaaactctagttt--cttctccttcatccaccaaagaggggtgatttagggtcaatttttgacttaaattca-ccctc 14717326  T
Q  218 taactcg 224  Q
    |||||||    
T  14717325 taactcg 14717319  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 52839373 - 52839461
Alignment:
Q  134 gtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||| |||||||||||||| |  |||| ||||| ||  ||| || ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  52839373 gtcgccaaaactctagtttgt--tctctttcatccattaaagaggggtgatttagggtcaatttttgacccaaaatcacccttctaactcg 52839461  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 52839496 - 52839559
Alignment:
Q  161 attcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||| || |||| || ||| ||||||| |||||||||||||||||||||||| |||||||||    
T  52839496 attcatccatcaaagaggggtgatttatgatcaatttttgacccaaaatcacccttctaactcg 52839559  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 5832230 - 5832271
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  5832230 atttagggtcaatttttgaccctaaatcacccctctaactcg 5832271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 38646581 - 38646622
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  38646581 atttatggtcaatttttgacccaaaatcacccatgtaactcg 38646622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 13691874 - 13691838
Alignment:
Q  184 tttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    |||| ||||||||||||||||||||||||||||||||    
T  13691874 tttagggtcaatttttgacccaaaatcacccctctaa 13691838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 30853931 - 30853868
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccc 215  Q
    ||||||||| ||||| ||||||| ||  || ||| | |||||||||||||||||||||||||||    
T  30853931 tttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaatcacccc 30853868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 224
Target Start/End: Original strand, 23320448 - 23320478
Alignment:
Q  194 atttttgacccaaaatcacccctctaactcg 224  Q
    |||||||||||||||||||||||||||||||    
T  23320448 atttttgacccaaaatcacccctctaactcg 23320478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 44514138 - 44514068
Alignment:
Q  152 tttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaact 222  Q
    ||||||| | ||||| ||| ||| || ||| ||||| ||||||||||||||||||||||||| || |||||    
T  44514138 tttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacctctttaact 44514068  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 630902 - 630861
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||| |||||||||||||||| ||||||||| |||||||||    
T  630902 atttagggtcaatttttgaccctaaatcacccatctaactcg 630861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 2875710 - 2875646
Alignment:
Q  156 ttctcattcattcaccaaaaa-gaggtaatttatggtcaatttttgacccaaaatcacccctctaa 220  Q
    ||||| ||||| ||||||||| |||||  ||||||||||||| ||||||| |||||||||||||||    
T  2875710 ttctccttcatccaccaaaaaagaggtg-tttatggtcaattgttgaccccaaatcacccctctaa 2875646  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 10877327 - 10877384
Alignment:
Q  168 caccaaaaagaggtaatttatggtcaatttttg-acccaaaatcacccctctaactcg 224  Q
    ||||||| || ||| |||||||||||||||||  |||||||||||| |||||||||||    
T  10877327 caccaaagagtggtgatttatggtcaatttttttacccaaaatcacacctctaactcg 10877384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 17579744 - 17579805
Alignment:
Q  162 ttcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactc 223  Q
    |||||||| |||| || ||| | ||| ||||||||||||| ||||||||| |||||||||||    
T  17579744 ttcattcatcaaagaggggtgacttagggtcaatttttgaaccaaaatcatccctctaactc 17579805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 35078007 - 35077966
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  35078007 atttatgatcaaattttgacccaaaatcacctctctaactcg 35077966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 33703626 - 33703594
Alignment:
Q  183 atttatggtcaatttttgacccaaaatcacccc 215  Q
    ||||||||||||||||| |||||||||||||||    
T  33703626 atttatggtcaattttttacccaaaatcacccc 33703594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 46589158 - 46589213
Alignment:
Q  168 caccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctctaactcg 224  Q
    ||||||| || ||| ||||||| |||||||||||| |||||||| ||||||||||||    
T  46589158 caccaaagaggggtgatttatgatcaatttttgactcaaaatca-ccctctaactcg 46589213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 48655198 - 48655154
Alignment:
Q  168 caccaaaaagaggtaatttatggtcaatttttgacccaaaatcac 212  Q
    |||||||||| ||| |||||  |||||||||||||||||||||||    
T  48655198 caccaaaaaggggtgatttagagtcaatttttgacccaaaatcac 48655154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 1271 - 1174
Alignment:
Q  118 ttctctcttgtcaaccgtcgtcaaaactctagtttttcttctcattcattcaccaaaaagaggtaatttatggtcaatttttgacccaaaatcacccctc 217  Q
    ||||||||||| | |||||  | |||||||||||   |||||| ||||| ||||||| |  ||| ||||| ||||||||||||||||||||||| |||||    
T  1271 ttctctcttgtgagccgtcacctaaactctagtta--cttctctttcatccaccaaagatgggtgattta-ggtcaatttttgacccaaaatcatccctc 1175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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