View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_15 (Length: 299)
Name: NF11471_low_15
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_15 |
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| [»] scaffold1333 (1 HSPs) |
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Alignment Details
Target: scaffold1333 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 1474 - 1745
Alignment:
| Q |
9 |
agcagagaagcttaaggaaaaagagaaagaatgtgagccaaaattgtatgcttgcagcttagaacagaaagaaaaaacttgctttagaggatgttaattt |
108 |
Q |
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| T |
1474 |
agcagagaagcttaaggaaaaagagagagaatgtgagccaaaattctatgcttgcagcttagaacagaaagaaaaaacttgctttagaggatgttaattt |
1573 |
T |
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| Q |
109 |
gaggagtgagttaaacatttagtaatacttgagagaagtctatattagagaagtggaggaaatgaaattcaatgaagaaaattggcaaaagaagaatcaa |
208 |
Q |
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| T |
1574 |
gaggagtgagttaaacatttagtaatacttgagagaagtctatattagagaagtggaggaaatgaaattcaaagaagaaaattggcaaaagaagaatcaa |
1673 |
T |
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| Q |
209 |
gacttggggaatcaaaaagtttctcagagaaaaatcaaaccatcaaaccatacaaagagtttagctgaatct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674 |
gacttggggaatcaaaaagtttctcagagaaaaatcaaaccatcaaaccatacaaagagtttagctgaatct |
1745 |
T |
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