View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_17 (Length: 289)
Name: NF11471_low_17
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 21721320 - 21721584
Alignment:
| Q |
19 |
cttacttctggtatagtatagttagaggaagcaattttgataagaaaataaaactagctagcacgcagaagaaacacttgcatgagaaattttgaataaa |
118 |
Q |
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| T |
21721320 |
cttacttctggtatagtatagttagaggaagcaattttcataagaaaataaaactagctagcccgcagaagaaacacttgcatgagaaattttgaataaa |
21721419 |
T |
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| Q |
119 |
aattaggtagacattagacaagttaattaatagtcaaaagggcaagaa-gctattggaagataatttgtgtccaaataagaagatatattatggggcatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21721420 |
aattaggtagacattagacaagttaattaatagtcaaaagggcaagaaggcaattggaagataatttgtgtccaaataagaagatatattatggggcatg |
21721519 |
T |
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| Q |
218 |
ccaattcacaaattgcaaagacaaaagaaaacacgttccaaggagttgaattccctttcttctca |
282 |
Q |
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| T |
21721520 |
ccaattcacaaattgcaaagacaaaagaaaacacgttccaatgagttgaattccctttcttctca |
21721584 |
T |
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