View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_18 (Length: 285)
Name: NF11471_low_18
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 41327306 - 41327172
Alignment:
| Q |
141 |
acaatcccatttcacatttttattaacttagccttcatcccctttcgggtctctcttctctcttgcaccctttcaacaccaaacgccgcttctgcatctc |
240 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
41327306 |
acaatcccatttcacatttttattaactttgccttcatcccctttccggtctctcttctctcttgcaccctttcaacaccaaacgccgcttctacctctc |
41327207 |
T |
|
| Q |
241 |
tatcgaatctccttcagaacccgactctccctatg |
275 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41327206 |
catcgaatctccttcagaacccgactctccctatg |
41327172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 42313658 - 42313526
Alignment:
| Q |
141 |
acaatcccatttcacatttttattaacttagccttcatcccctttcgggtctctcttctctcttgcaccctttcaacaccaaacgccgcttctgcatctc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42313658 |
acaatcccatttcacatttttattaacttagccttcatcccctttccggtctctcttctctcttgcaccctttcaacaccaaacgccgcttctgc--ctc |
42313561 |
T |
|
| Q |
241 |
tatcgaatctccttcagaacccgactctccctatg |
275 |
Q |
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||| |||||||||||||||||||||||||||||| |
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| T |
42313560 |
catcaaatctccttcagaacccgactctccctatg |
42313526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42313804 - 42313739
Alignment:
| Q |
1 |
ttcaacattggaaaaagaaagcatgggtattggtaacatgttgtgaactacacttttccatcaaac |
66 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42313804 |
ttcaacattggaacaagaaagcatgggtattggtaacatgtcgtgaactacacttttccatcaaac |
42313739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 20910413 - 20910280
Alignment:
| Q |
141 |
acaatcccatttcacatttttattaacttagccttcatcccctttcgggtctctcttctctcttgcaccctttcaacaccaaacgccgcttctgcatctc |
240 |
Q |
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|
||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||| |
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| T |
20910413 |
acaatcccatttcacatttttattatcttttccttcatcccttttccggtctctcttctctcttgcaccctttcaacaccaaacgccg-ttctacctctc |
20910315 |
T |
|
| Q |
241 |
tatcgaatctccttcagaacccgactctccctatg |
275 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
20910314 |
catcgaatctccttcagaacccgactctccctatg |
20910280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 20924861 - 20924728
Alignment:
| Q |
141 |
acaatcccatttcacatttttattaacttagccttcatcccctttcgggtctctcttctctcttgcaccctttcaacaccaaacgccgcttctgcatctc |
240 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||| |
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| T |
20924861 |
acaatcccatttcacatttttattatcttttccttcatcccttttccggtctctcttctctcttgcaccctttcaacaccaaacgccg-ttctacctctc |
20924763 |
T |
|
| Q |
241 |
tatcgaatctccttcagaacccgactctccctatg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
20924762 |
catcgaatctccttcagaacccgactctccctatg |
20924728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20910553 - 20910488
Alignment:
| Q |
1 |
ttcaacattggaaaaagaaagcatgggtattggtaacatgttgtgaactacacttttccatcaaac |
66 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
20910553 |
ttcaacattggaacaagaaagcatgggtattggtaacatgttatgaactacacttttccatcaaac |
20910488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20925001 - 20924936
Alignment:
| Q |
1 |
ttcaacattggaaaaagaaagcatgggtattggtaacatgttgtgaactacacttttccatcaaac |
66 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20925001 |
ttcaacattggaacaagaaagcatgggtattggtaacatgttatgaactacacttttccatcaaac |
20924936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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