View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_low_2 (Length: 855)

Name: NF11471_low_2
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_low_2
NF11471_low_2
[»] scaffold0044 (2 HSPs)
scaffold0044 (340-851)||(56906-57420)
scaffold0044 (1-283)||(56599-56884)


Alignment Details
Target: scaffold0044 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 340 - 851
Target Start/End: Original strand, 56906 - 57420
Alignment:
Q  340 ttttacaagattaattactatggtacaaaacatatcaattaagttattacttaatctttgtgcaaataccaaaattatcgaagtttaggaataccaataa 439  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  56906 ttttgcaaggttaattactatggtacaaaacatatcaattaagttattacttaatctttgtgcaaataccaaaattatcaaagtttaggaataccaataa 57005  T
Q  440 ctgctatataaaacataattacaagtgaacgcaactaatatcataggacaatcaata---ataatagcaataataacacatcccatctcaatccctcaac 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||    
T  57006 ctgctatataaaacataattacaagtgaacgcaactaatatcataggacaatcaataataataatagcaataataacacatcccatctcattccctcaac 57105  T
Q  537 taaatactttgtatcctaaatccggtacatcccaaaacgtttaaccaatgactaatcactatcgcagaactttcaaccaatgattaatcactatcactgg 636  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  57106 taaatactttgtatcctaaatccggtacatcccaaaacgtttaaccaatgactaatcactatcgcagaactttcaaccaatgattaatcactatcgctcg 57205  T
Q  637 accaaaaagctgcttcactacccttggccatattttctaaaatgtaaccccttttatattatattttgccaactttaccctctccccagatgcacaaatt 736  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  57206 accaaaaagctgcttcactacccttggccatattttctaaaatgtaaccccttttatattatatttggccaattttaccctctcccgagatgcacaaatt 57305  T
Q  737 cggacgagattagtctggatgtatacatccataccggatttgtccggatgtatctagatgcatacatccagaccaatctcatccgcatttaggcatctac 836  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  57306 cggactagattagtctggatgtatacatccataccggatttgtccggatgtatctagatgcatacatccagaccaatctcatccgcatttaggcatctac 57405  T
Q  837 aacttcatctctctc 851  Q
    |||||||||||||||    
T  57406 aacttcatctctctc 57420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 56599 - 56884
Alignment:
Q  1 cagaaaaacatcagaaaaaggaattttttcatataaattgaggcgaatacaacaagcagtgaagacagataaagtgagagatatgattgagaattaagaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56599 cagaaaaacatcagaaaaaggaaatttttcatataaattgaggcgaatacaacaagcagtgaagacagataaagtgagagatatgattgagaattaagaa 56698  T
Q  101 agaccttaaaaatcgaggag-gaaaaatacgcggttgtaacttgtaatcac-aaaacaaacatagaaaccagcaattaatttt-ccagccgtattccatt 197  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||||||||    
T  56699 agaccttaaaaatcgaggagagaaaaatacgcggttgtaacttgtaatcacaaaaaaaaacatagaaaccagcaattaattttaccagccatattccatt 56798  T
Q  198 tcagcacaaatctagagatattttcactgaaataatttagctataacataacatactcaattccaaaactttggtagtttaagcat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  56799 tcagcacaaatctagagatattttcactgaaataatttagctatgacataacatactcaattccaaaactttggtagtttaagcat 56884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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