View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_low_22 (Length: 251)

Name: NF11471_low_22
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_low_22
NF11471_low_22
[»] chr6 (17 HSPs)
chr6 (1-241)||(33215175-33215418)
chr6 (134-223)||(1127224-1127313)
chr6 (134-231)||(27822140-27822238)
chr6 (138-231)||(14238410-14238503)
chr6 (134-216)||(8049003-8049084)
chr6 (134-234)||(12882092-12882193)
chr6 (134-231)||(18727865-18727964)
chr6 (170-230)||(3536040-3536099)
chr6 (171-231)||(18727115-18727174)
chr6 (170-240)||(33693840-33693910)
chr6 (134-230)||(11658901-11658997)
chr6 (170-223)||(29340837-29340889)
chr6 (170-223)||(30052209-30052261)
chr6 (134-219)||(33615538-33615623)
chr6 (170-230)||(3542251-3542310)
chr6 (170-230)||(30049922-30049981)
chr6 (151-220)||(22873801-22873870)
[»] chr7 (28 HSPs)
chr7 (134-222)||(24840113-24840201)
chr7 (133-241)||(1369774-1369882)
chr7 (134-223)||(6451780-6451869)
chr7 (134-220)||(27142636-27142722)
chr7 (134-231)||(11000848-11000945)
chr7 (139-223)||(4888716-4888799)
chr7 (170-230)||(27309638-27309698)
chr7 (170-231)||(1883495-1883556)
chr7 (170-231)||(5934610-5934671)
chr7 (170-222)||(1753629-1753681)
chr7 (170-230)||(1874544-1874604)
chr7 (134-222)||(11228951-11229039)
chr7 (134-220)||(8916410-8916496)
chr7 (134-231)||(11228690-11228788)
chr7 (27-92)||(18790362-18790427)
chr7 (143-231)||(30217794-30217880)
chr7 (170-230)||(859180-859239)
chr7 (170-230)||(1217184-1217243)
chr7 (170-230)||(13882710-13882769)
chr7 (170-230)||(13886183-13886242)
chr7 (138-201)||(3778760-3778823)
chr7 (134-231)||(1365641-1365738)
chr7 (133-231)||(4133296-4133394)
chr7 (189-231)||(13466756-13466798)
chr7 (151-220)||(7803064-7803133)
chr7 (134-222)||(1786653-1786741)
chr7 (134-232)||(35814841-35814938)
chr7 (170-230)||(1220464-1220523)
[»] chr2 (23 HSPs)
chr2 (134-231)||(23457616-23457713)
chr2 (134-220)||(23456545-23456631)
chr2 (136-229)||(32161993-32162086)
chr2 (134-231)||(33051588-33051685)
chr2 (134-223)||(5171615-5171704)
chr2 (132-201)||(8294546-8294615)
chr2 (170-231)||(36647299-36647359)
chr2 (134-230)||(21772345-21772440)
chr2 (170-230)||(27952342-27952401)
chr2 (170-230)||(27956178-27956237)
chr2 (170-230)||(31634110-31634169)
chr2 (138-208)||(12123941-12124011)
chr2 (134-214)||(4184898-4184979)
chr2 (170-231)||(15129396-15129456)
chr2 (145-230)||(18945941-18946026)
chr2 (170-230)||(2155973-2156032)
chr2 (170-230)||(22011442-22011501)
chr2 (182-230)||(29715168-29715216)
chr2 (170-230)||(31636343-31636402)
chr2 (170-230)||(33655634-33655693)
chr2 (170-220)||(32163804-32163854)
chr2 (134-197)||(36615178-36615243)
chr2 (170-231)||(28737912-28737972)
[»] chr4 (19 HSPs)
chr4 (134-219)||(10494873-10494958)
chr4 (134-231)||(13991401-13991498)
chr4 (134-229)||(15848375-15848469)
chr4 (134-220)||(7634050-7634136)
chr4 (133-223)||(18689551-18689641)
chr4 (174-231)||(54700619-54700676)
chr4 (134-231)||(7724099-7724193)
chr4 (133-231)||(17254905-17255003)
chr4 (134-231)||(22486798-22486893)
chr4 (170-227)||(38888016-38888073)
chr4 (170-241)||(50515907-50515978)
chr4 (134-230)||(53477235-53477333)
chr4 (134-214)||(3675081-3675161)
chr4 (170-230)||(6659354-6659413)
chr4 (134-202)||(13990728-13990796)
chr4 (133-221)||(18657074-18657162)
chr4 (170-231)||(7723686-7723745)
chr4 (136-213)||(9260545-9260622)
chr4 (138-231)||(40206123-40206215)
[»] chr1 (17 HSPs)
chr1 (147-230)||(28660769-28660852)
chr1 (134-231)||(10927164-10927259)
chr1 (134-231)||(12944086-12944183)
chr1 (134-206)||(31915519-31915592)
chr1 (134-223)||(50713683-50713772)
chr1 (134-231)||(10928259-10928356)
chr1 (146-242)||(31913359-31913454)
chr1 (136-231)||(43681433-43681529)
chr1 (133-216)||(33152756-33152841)
chr1 (134-222)||(8221458-8221546)
chr1 (170-230)||(8931226-8931285)
chr1 (134-226)||(9194970-9195061)
chr1 (134-241)||(10925710-10925814)
chr1 (170-231)||(28661090-28661151)
chr1 (170-221)||(13444021-13444071)
chr1 (134-231)||(28659587-28659686)
chr1 (170-230)||(50857468-50857527)
[»] chr8 (21 HSPs)
chr8 (134-231)||(24731197-24731294)
chr8 (134-230)||(25479427-25479524)
chr8 (134-220)||(20693769-20693855)
chr8 (134-220)||(14130135-14130221)
chr8 (134-230)||(16598218-16598315)
chr8 (134-234)||(2687712-2687812)
chr8 (134-213)||(2689117-2689195)
chr8 (143-230)||(18468628-18468714)
chr8 (132-231)||(2189744-2189844)
chr8 (134-227)||(24577554-24577647)
chr8 (134-223)||(24578807-24578896)
chr8 (170-231)||(42890398-42890458)
chr8 (170-231)||(42891687-42891747)
chr8 (170-230)||(23570590-23570649)
chr8 (170-223)||(22926679-22926731)
chr8 (170-231)||(24731038-24731099)
chr8 (134-231)||(26374870-26374966)
chr8 (170-230)||(22512070-22512129)
chr8 (170-230)||(22519370-22519429)
chr8 (170-230)||(22921874-22921933)
chr8 (170-230)||(6845342-6845401)
[»] chr3 (8 HSPs)
chr3 (138-231)||(2472711-2472803)
chr3 (170-230)||(43303984-43304043)
chr3 (170-223)||(5128915-5128967)
chr3 (134-206)||(2107901-2107972)
chr3 (170-230)||(43306696-43306755)
chr3 (171-222)||(45168351-45168401)
chr3 (170-231)||(33175841-33175902)
chr3 (170-230)||(3063761-3063820)
[»] scaffold0110 (1 HSPs)
scaffold0110 (143-229)||(46758-46844)
[»] chr5 (8 HSPs)
chr5 (134-201)||(18252386-18252453)
chr5 (173-231)||(492576-492634)
chr5 (149-230)||(8456402-8456483)
chr5 (134-230)||(26140313-26140409)
chr5 (138-230)||(19497327-19497419)
chr5 (170-230)||(21848989-21849048)
chr5 (170-223)||(40778817-40778869)
chr5 (170-230)||(9868428-9868488)
[»] scaffold0251 (1 HSPs)
scaffold0251 (134-231)||(9672-9770)
[»] scaffold0054 (1 HSPs)
scaffold0054 (145-223)||(37693-37769)
[»] scaffold0240 (1 HSPs)
scaffold0240 (138-231)||(1632-1724)
[»] scaffold0024 (1 HSPs)
scaffold0024 (182-231)||(145752-145801)
[»] scaffold0531 (1 HSPs)
scaffold0531 (170-216)||(11626-11671)
[»] scaffold0330 (1 HSPs)
scaffold0330 (170-231)||(17646-17706)
[»] scaffold0236 (1 HSPs)
scaffold0236 (170-226)||(16404-16459)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 33215418 - 33215175
Alignment:
Q  1 ctttagtattattattgagcctaatgttaataatttatgttgtattttctgttctagtttttcggttcattagggtttccttagtgtttaaagtttaaac 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||    
T  33215418 ctttagtattattattgagcctaattttaataatttatgttttattttctgttttaggttttcgattcattagggtttccttagtgtttaaagtttacac 33215319  T
Q  101 acttcagttgtagccagagaga--gttttatt-attagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaact 197  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33215318 acttcagttgtagctagagagactgttttattcattagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaact 33215219  T
Q  198 tgtttctttttaatctaggtttagcgtttgctagtctctgcttc 241  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  33215218 tgtttctttttaatctagatttagcgtttgctagtctctgcttc 33215175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 1127224 - 1127313
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    |||||||| ||||||| ||||| ||| || |||   |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1127224 agagttttctcaatttttggtgtattccgaaacactattttcacaaatttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 1127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 27822238 - 27822140
Alignment:
Q  134 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| ||||||||||||||||| ||||||    |||||||| |||||||||||| ||||||||| |||||  || |||||||||||||||||||    
T  27822238 agagtttttctcaatttctggtggatttcggaaccctgttttcacaagtttgtcgcttgaaaacttgttccttttctatttaggtttagcgtttgctag 27822140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 14238410 - 14238503
Alignment:
Q  138 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||| | |||||| |||| | |||||| | ||||||||| |||||||||||||||||||||||||||| ||| || |||||| |||||||||    
T  14238410 tttttttattttctgatggactccggaaccttattttcacaagtttgtcgcttgcaaacttgtttcttttcaatttatgtttagtgtttgctag 14238503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 8049084 - 8049003
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 216  Q
    |||||||| ||||||||||||||||  |||| | | ||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  8049084 agagttttctcaatttctggtggatcccggagccttattttcacaagtttgtcacttgcaaactt-tttctttttaatctagg 8049003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 12882092 - 12882193
Alignment:
Q  134 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagt 232  Q
    ||||||||| ||||||||||||||||| || |||   ||||||||| |||||||||||  |||||||| |||| | |||||||||| || ||||||||||    
T  12882092 agagtttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgctttaaaacttgtctcttctcaatctaggttcagtgtttgctagt 12882191  T
Q  233 ct 234  Q
    ||    
T  12882192 ct 12882193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 18727964 - 18727865
Alignment:
Q  134 agagttttttcaatttctggtggattacggaa-cttgattttcacaggtttgtcgcttgcaaacttgtttcttttt-aatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||||||||||||| ||||| |||  ||||||| | ||| | |||||||||||| |||||||||  ||||| ||||||||||||||||    
T  18727964 agagttttctcaatttctggtggatttcggaaccttatttttcaccgatttattgcttgcaaacttatttctttttctatctaagtttagcgtttgctag 18727865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 3536040 - 3536099
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  3536040 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 3536099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 18727115 - 18727174
Alignment:
Q  171 ttttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  18727115 ttttcacaagtttgtcgcttgcgaacttgtgt-ttttcaatctaggtttagcgtttgctag 18727174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 33693910 - 33693840
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagtctctgctt 240  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||| |||| || |||| ||| ||| ||||    
T  33693910 attttcacaggtttgttgcttgcaaatttgtttcttttcaatctatgttttgcatttgttagcctccgctt 33693840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 11658901 - 11658997
Alignment:
Q  134 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| ||||||| ||||||||| |  ||||  ||||||||| |||| ||||||||||| ||| ||||||| ||||||||||||| | ||||||    
T  11658901 agagtttttctcaatttttggtggattccaaaactctattttcacaagtttatcgcttgcaaatttg-ttcttttcaatctaggtttagtgcttgcta 11658997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 29340889 - 29340837
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    ||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||    
T  29340889 attttcacaagtttgtcgcttgcaaacttgttt-ttttctatctaggtttagcg 29340837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 30052209 - 30052261
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  30052209 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 30052261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 33615623 - 33615538
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttt 219  Q
    |||||||||||||||| ||||| |||  | |||   ||||||||| ||||||||||||||||||||||  ||||  ||||||||||    
T  33615623 agagttttttcaatttatggtgaattctgaaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttt 33615538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 3542251 - 3542310
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| ||||||||||| |||||||| |||||||  |||||||||||||| ||||||    
T  3542251 attttcacaagtttgtcgcttacaaacttg-ttcttttctatctaggtttagcgcttgcta 3542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 30049922 - 30049981
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  || ||||||||||| ||||||    
T  30049922 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatataggtttagcgcttgcta 30049981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 22873801 - 22873870
Alignment:
Q  151 tggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    ||||||||| |||||| |   ||||||| ||||||||| ||||||||||| |||||| ||| ||||||||    
T  22873801 tggtggattccggaacctttatttcacaagtttgtcgcatgcaaacttgtctcttttcaatttaggttta 22873870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 24840113 - 24840201
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 222  Q
    |||||||| ||||||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  24840113 agagttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagc 24840201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 1369774 - 1369882
Alignment:
Q  133 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagt 232  Q
    ||||||||| ||||||||||||||||| ||||||   ||||| ||| |||| ||||||||||||||||||||||| |||||||||||| || |||||||     
T  1369774 tagagttttctcaatttctggtggattccggaaccctattttaacaagtttatcgcttgcaaacttgtttcttttcaatctaggtttaacgcttgctagc 1369873  T
Q  233 ctctgcttc 241  Q
    ||| |||||    
T  1369874 ctccgcttc 1369882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 6451869 - 6451780
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    |||||||||||||||| || |||||| || ||| | |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  6451869 agagttttttcaatttttgttggattccgaaaccttattttcacaggtttgtcgcttgcaaacttgtttcctttcaatctagatttagcg 6451780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 27142636 - 27142722
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    |||||||| |||||||||||||| ||  |||||   ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  27142636 agagttttctcaatttctggtggtttcaggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggttta 27142722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 11000945 - 11000848
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||  |||||||||||||||| | ||||   ||||||||  ||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  11000945 agagttttcccaatttctggtggattcctgaaccctattttcactagtttgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgctag 11000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 4888799 - 4888716
Alignment:
Q  139 tttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||  ||||||||| ||||    
T  4888799 tttttcaatttctggtgaattccggaactctattttcacaggtttgtcgcttgcaaacttg-ttcttttctatctaggttcagcg 4888716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 27309698 - 27309638
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  27309698 attttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagcgcttgcta 27309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 1883495 - 1883556
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  1883495 attttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggtttagtgtttgctag 1883556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 5934610 - 5934671
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  5934610 attttcacaagtttgtcgcttgcaaatttgtttcttttcaatctaggtttagcgcttgctag 5934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 1753681 - 1753629
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 222  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  1753681 attttcacaagtttgtcgcttgcaaacttgtttcttttcaatttaggtttagc 1753629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 1874544 - 1874604
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  1874544 attttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaaggtttagtgtttgcta 1874604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 11228951 - 11229039
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 222  Q
    |||||||| |||||||||||||||||  |||||    |||||||| ||||||||| ||||||||||||  |||| ||||||||||||||    
T  11228951 agagttttatcaatttctggtggattctggaacccttttttcacacgtttgtcgcctgcaaacttgttctttttcaatctaggtttagc 11229039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 8916496 - 8916410
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    |||||||| ||||||||||||||||| | |||||  |||| |||| |||| ||| |||||||||||||  |||| ||||||||||||    
T  8916496 agagttttctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttcattttaaatctaggttta 8916410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 11228690 - 11228788
Alignment:
Q  134 agagttttttcaattt-ctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||| ||||||||||   ||||   |||| |||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||    
T  11228690 agagttttctcaattttctggtggattctagaaccctatttccacaagtttgtcgcttccaaacttgtttcttttttatcaaggtttagtgtttgctag 11228788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 18790427 - 18790362
Alignment:
Q  27 ttaataatttatgttgtattttctgttctagtttttcggttcattagggtttccttagtgtttaaa 92  Q
    |||||||||| |||| ||||||||||| | | ||||||||||||||||||||| ||||| ||||||    
T  18790427 ttaataatttttgttttattttctgttttggattttcggttcattagggtttctttagtatttaaa 18790362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 30217794 - 30217880
Alignment:
Q  143 tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||| |||||||||| | |||||  ||||||||| ||||||||||||| ||||||||   ||| ||||||||||||||| |||||||    
T  30217794 tcaattactggtggatttcagaactctattttcacaagtttgtcgcttgcgaacttgtt--ctttcaatctaggtttagcgcttgctag 30217880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 859239 - 859180
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  859239 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 1217243 - 1217184
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  1217243 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 1217184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 13882769 - 13882710
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  13882769 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 13882710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 13886242 - 13886183
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  13886242 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 13886183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 3778823 - 3778760
Alignment:
Q  138 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 201  Q
    |||| ||||||||||||||||| ||||||   ||||||||| |||| |||||||||||||||||    
T  3778823 ttttctcaatttctggtggattccggaaccctattttcacaagtttctcgcttgcaaacttgtt 3778760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 1365641 - 1365738
Alignment:
Q  134 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| ||||||| |||||||||| |||||   ||||||||| |||  |||||| |||||||||| ||||  ||||||||||||||| |||||||    
T  1365641 agagtttttctcaatttttggtggattatggaaccctattttcacaagttcatcgcttacaaacttgttcctttc-aatctaggtttagcgcttgctag 1365738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 4133394 - 4133296
Alignment:
Q  133 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| ||||||||| | ||||| | |||||  ||||||||| |||||||||||| ||| |||||  | || |||||| ||||||| ||||||||    
T  4133394 tagagttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcatttgctag 4133296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 13466756 - 13466798
Alignment:
Q  189 ttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  13466756 ttgcaaacttgtttctttttaatataggtttagcgcttgctag 13466798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 7803133 - 7803064
Alignment:
Q  151 tggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    ||||||||| |||||| | ||||||| | |||||| |||||||||||||||||||||  | |||||||||    
T  7803133 tggtggattccggaaccttattttcataagtttgttgcttgcaaacttgtttcttttcgacctaggttta 7803064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 1786653 - 1786741
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 222  Q
    ||||||||  ||||||||| ||||||  |||||   |||||| || ||||||||||||||||||||||  ||||  |||||||||||||    
T  1786653 agagttttcgcaatttctgatggattctggaaccctattttcgcatgtttgtcgcttgcaaacttgttatttttctatctaggtttagc 1786741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 35814841 - 35814938
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagt 232  Q
    |||||||| ||||||| |||| ||||   |||| | ||||| ||| |||||||||||||||| ||| ||| ||| ||||||| ||||| ||||||||||    
T  35814841 agagttttctcaatttatggtagattcaagaaccttatttttacaagtttgtcgcttgcaaagttggttc-tttcaatctagatttagtgtttgctagt 35814938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 1220523 - 1220464
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||| ||||||||||| ||| |||  || ||||||||||||||||||    
T  1220523 attttcacaagtttgtcgtttgcaaacttg-ttcatttctatgtaggtttagcgtttgcta 1220464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 23457616 - 23457713
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||| ||||||||| ||||||   ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  23457616 agagttttctcaatttttggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttattttcaatctaggtttagcgcttgctag 23457713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 23456545 - 23456631
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    |||||||| ||| |||| |||||||| | |||||| ||||||| | |||||||||||||||||||||||||||| ||| ||||||||    
T  23456545 agagttttctcagtttccggtggattccagaactttattttcaaaagtttgtcgcttgcaaacttgtttcttttcaatataggttta 23456631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 32162086 - 32161993
Alignment:
Q  136 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 229  Q
    |||||| ||| ||||||||||||| | ||||   ||||||||| ||||||| ||||||||||||||||||||  ||||||||||| || |||||    
T  32162086 agttttctcagtttctggtggattcctgaaccctattttcacaagtttgtcacttgcaaacttgtttcttttcgatctaggtttaacgcttgct 32161993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 33051588 - 33051685
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||||| ||||||| | ||||   ||||||| | ||||||||||||||||||||||  |||| ||| ||||||||||| |||||||    
T  33051588 agagttttctcaatttctagtggattccagaaccctattttcaaaagtttgtcgcttgcaaacttgttctttttcaatttaggtttagcgcttgctag 33051685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 5171704 - 5171615
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    |||||||| ||||||||| |||||||   ||||   ||||| ||| ||||||||||||||||||||| |||||| ||||||| |||||||    
T  5171704 agagttttctcaatttctagtggattcttgaaccctatttttacaagtttgtcgcttgcaaacttgtctcttttcaatctagatttagcg 5171615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 8294546 - 8294615
Alignment:
Q  132 ttagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 201  Q
    ||||||||||||||||||||||||||||| | |||   ||||| ||| ||||||||||||||||| ||||    
T  8294546 ttagagttttttcaatttctggtggattatgaaacactatttttacaagtttgtcgcttgcaaacgtgtt 8294615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 36647299 - 36647359
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||||    
T  36647299 attttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcgaggtttagcgcttgctag 36647359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 21772345 - 21772440
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    |||||||| ||||||| || ||||||  |||||   ||||||| | ||||||||||||||||||||||| |||| |||||| |||||||||| ||||    
T  21772345 agagttttctcaatttgtgatggattcaggaaccctattttcataagtttgtcgcttgcaaacttgttt-ttttcaatctaagtttagcgttggcta 21772440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 27952401 - 27952342
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  27952401 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 27952342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 27956237 - 27956178
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||| |||||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  27956237 attttcataggtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 27956178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 31634110 - 31634169
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||| ||||||||| |||||||  |||||||||||||||||||||    
T  31634110 attttcacaagtttgtcgctagcaaacttg-ttcttttctatctaggtttagcgtttgcta 31634169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 12124011 - 12123941
Alignment:
Q  138 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttttt 208  Q
    |||| ||||||| ||||||||| | ||||   |||||||||||||||||||||||||||||| || |||||    
T  12124011 ttttctcaatttttggtggattcctgaaccatattttcacaggtttgtcgcttgcaaacttgatttttttt 12123941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 4184898 - 4184979
Alignment:
Q  134 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatcta 214  Q
    ||||||||| ||||||||| ||||||| || |||   ||||||||| ||||||||||||| ||||| |||||||| ||||||    
T  4184898 agagtttttctcaatttctcgtggattccgaaaccctattttcacaagtttgtcgcttgcgaacttatttcttttgaatcta 4184979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 15129396 - 15129456
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| ||||||||||||| |||||| |||||||  |||||||||||||| |||||||    
T  15129396 attttcacaagtttgtcgcttgcgaacttg-ttcttttctatctaggtttagcgcttgctag 15129456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 18945941 - 18946026
Alignment:
Q  145 aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||||| ||| |||||||   || ||||| |||||||||||||||| || |||||| | |||||| |||||||| ||||||    
T  18945941 aatttctggtgaattccggaactctgttctcacaagtttgtcgcttgcaaatttatttcttctcaatctacgtttagcgcttgcta 18946026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 2155973 - 2156032
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||| ||||||||| |||||||  |||||||||||||| ||||||    
T  2155973 attttcacaagtttgtcgctcgcaaacttg-ttcttttctatctaggtttagcgcttgcta 2156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 22011442 - 22011501
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| ||||||| |||||||||||| |||||||  |||||||||||||| ||||||    
T  22011442 attttcacaagtttgtcacttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 22011501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 29715168 - 29715216
Alignment:
Q  182 ttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||||||||||| ||| |||| ||||||||||||| ||||||||    
T  29715168 ttgtcgcttgcaaacttttttattttcaatctaggtttagagtttgcta 29715216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 31636343 - 31636402
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||| | |||||||  |||||||||||||| ||||||    
T  31636343 attttcacaagtttgtcgcttgcaaactag-ttcttttctatctaggtttagcgcttgcta 31636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 33655634 - 33655693
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| ||||||||||||||||||||| | ||||  |||||||||||||| ||||||    
T  33655634 attttcacaagtttgtcgcttgcaaacttgtat-ttttctatctaggtttagcgcttgcta 33655693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 32163854 - 32163804
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    ||||||||| ||||| ||||| ||||||| |||||||| ||||||||||||    
T  32163854 attttcacaagtttgacgcttacaaacttatttcttttcaatctaggttta 32163804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 36615178 - 36615243
Alignment:
Q  134 agagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaact 197  Q
    |||||||||||  ||||||||||||||| |||||| | ||||| |||  |||||||||||||||||    
T  36615178 agagttttttcttaatttctggtggattccggaaccttatttttacaattttgtcgcttgcaaact 36615243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 28737912 - 28737972
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||| | ||||||||||||||||||||  |||||| ||||||||||||||  |||||||    
T  28737912 attttcaaaagtttgtcgcttgcaaacttg-ctcttttcaatctaggtttagcacttgctag 28737972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 10494873 - 10494958
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttt 219  Q
    |||||||| ||||||||||||| ||| |||||||  ||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  10494873 agagttttctcaatttctggtgaattccggaactctattttcacaggtttgtcacttgcaaacttgtttcttttccatctaggttt 10494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 13991498 - 13991401
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| |||| |||||||||||| | |||| | |||||| || |||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  13991498 agagttttctcaaattctggtggattccagaaccttattttcgcatgtttgtcgcttgcaaacttgtttcttttcaatctagatttagcgcttgctag 13991401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 15848375 - 15848469
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 229  Q
    |||||||| ||||||| ||||||||| |||||||   ||||||||  |||||| ||||||| |||||||||||| ||||||| |||||||||||||    
T  15848375 agagttttctcaatttttggtggatttcggaactctcttttcacaattttgtcacttgcaa-cttgtttcttttcaatctagatttagcgtttgct 15848469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 7634050 - 7634136
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    |||||||| ||||||||||||||||| | |||||  |||| |||| |||| ||| ||||||||||||| ||||| ||||||||||||    
T  7634050 agagttttctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttccttttcaatctaggttta 7634136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 18689641 - 18689551
Alignment:
Q  133 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    ||||||||| |||||||||||||||||  | |||   ||||| ||| ||||||||| ||||||||| |||||||| |||||||||||||||    
T  18689641 tagagttttctcaatttctggtggattctgcaaccctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttagcg 18689551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 54700676 - 54700619
Alignment:
Q  174 tcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  54700676 tcacaagtttgtcacttgcaaacttgtttcttttcaatataggtttagcgtttgctag 54700619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 7724193 - 7724099
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||||||||||||| ||||||   |||||||   |||||||||| ||||||||| ||||||| ||| ||||||||||  |||||||    
T  7724193 agagttttctcaatttctggtggattccggaaccctattttca---gtttgtcgctcgcaaacttgcttcttttcaatataggtttagcacttgctag 7724099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 17255003 - 17254905
Alignment:
Q  133 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| ||||||||| | ||||| | |||||  ||||||||| |||||||||||| ||| |||||  | || |||||| ||||||||||||||||    
T  17255003 tagagttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcgtttgctag 17254905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 22486893 - 22486798
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||||||||||||| |||||| | ||||||||| | |||||||||||||||||| |  ||||  || ||||||||||| |||||||    
T  22486893 agagttttctcaatttctggtggattccggaacct-attttcacaag-ttgtcgcttgcaaacttggtctttttctatataggtttagcgcttgctag 22486798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 38888073 - 38888016
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttg 227  Q
    ||||||||| |||||||||||||||| |||||| |||| |||||||||||| ||||||    
T  38888073 attttcacaagtttgtcgcttgcaaatttgtttattttcaatctaggtttaacgtttg 38888016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 50515978 - 50515907
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagtctctgcttc 241  Q
    ||||||||| |||||||||||||||||||||||||| | | |||| || ||||| ||||||| ||| |||||    
T  50515978 attttcacaagtttgtcgcttgcaaacttgtttcttctcagtctaagtgtagcgcttgctagcctccgcttc 50515907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 53477333 - 53477235
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt--ttaatctaggtttagcgtttgcta 230  Q
    |||||||| |||||||||||||||||    |||   ||||||||||||||| |||||| |||||||||| |||  |  |||||||||||||||||||||    
T  53477333 agagttttctcaatttctggtggattctaaaaccccattttcacaggtttgacgcttgtaaacttgtttttttactctatctaggtttagcgtttgcta 53477235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 3675081 - 3675161
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatcta 214  Q
    |||||||| | ||||||||||||||| || ||||| | |||||  | ||| ||| ||||||||||||||||||| ||||||    
T  3675081 agagttttcttaatttctggtggattccgaaactttaatttcatggatttatcgtttgcaaacttgtttcttttcaatcta 3675161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 6659413 - 6659354
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||| ||||||| ||||||    
T  6659413 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctagatttagcgcttgcta 6659354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 13990796 - 13990728
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgttt 202  Q
    ||||||||||||||||||| |||||| | ||||   ||||||||| ||||||  |||||||||||||||    
T  13990796 agagttttttcaatttctgatggattccagaaccctattttcacaagtttgttacttgcaaacttgttt 13990728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 18657162 - 18657074
Alignment:
Q  133 tagagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttag 221  Q
    ||||||||| |||||||| ||||||||  | ||    ||||| ||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  18657162 tagagttttctcaatttccggtggattctgaaatcctatttttacaagtttgtcgcatgcaaacttttttcttttcaatctaggtttag 18657074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 7723745 - 7723686
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| |||||| ||||||||||||| ||||||| |||||| |||||||| |||||||    
T  7723745 attttcacaagtttgtagcttgcaaacttg-ttcttttcaatcta-gtttagcgcttgctag 7723686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 9260545 - 9260622
Alignment:
Q  136 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatct 213  Q
    |||||| |||||||||||||||||  | |||   |||||| || |||||||| |||||||||||||||| || |||||    
T  9260545 agttttctcaatttctggtggattctgaaaccctattttcgcaagtttgtcgtttgcaaacttgtttctcttaaatct 9260622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 40206123 - 40206215
Alignment:
Q  138 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||| ||||||||||||| ||| || |||   ||||||||| ||||||||||||| ||||||| || ||| ||| ||| ||||||| |||||||    
T  40206123 ttttctcaatttctggtgaattccgaaacactattttcacaagtttgtcgcttgcgaacttgtctc-tttcaatttagatttagcgcttgctag 40206215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 28660852 - 28660769
Alignment:
Q  147 tttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  28660852 tttctggtggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttatctatctaggtttagcgtttgcta 28660769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 10927164 - 10927259
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||||||||||||| ||||||    |||||||| ||||||||||||||||||||||  |||| | |||||||||||||||||||||    
T  10927164 agagttttctcaatttctggtggattccggaaccc--ttttcacaagtttgtcgcttgcaaacttgttctttttcagtctaggtttagcgtttgctag 10927259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 12944086 - 12944183
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||||||||||||| | ||||   ||||| ||| |||||||| ||||||||||||||||||| ||||||| ||||||| |||||||    
T  12944086 agagttttctcaatttctggtggattccagaaccctatttttacaagtttgtcgtttgcaaacttgtttcttttcaatctagatttagcgcttgctag 12944183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 31915519 - 31915592
Alignment:
Q  134 agagttttt-tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt 206  Q
    ||||||||| ||||||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||    
T  31915519 agagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttcttt 31915592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 50713683 - 50713772
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    |||||||| ||||||||||||||||| || |||   ||||||||| ||||||||| ||| ||||||| |||||| |||||||||||||||    
T  50713683 agagttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgcctgcgaacttgtctcttttcaatctaggtttagcg 50713772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 10928259 - 10928356
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||| | ||||||| || ||| | ||||||||| ||||||| ||| ||||||| | |||||||||||||||||||||  |||||||    
T  10928259 agagttttctcaatttatagtggattccgaaaccttattttcacaagtttgtcacttacaaacttatatctttttaatctaggtttagcacttgctag 10928356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 31913359 - 31913454
Alignment:
Q  146 atttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagtctctgcttct 242  Q
    |||||||||||||| |||||    ||||| ||| |||||||||||||||||||||||| ||| || |||||||||||| ||||||| || |||||||    
T  31913359 atttctggtggatttcggaaacctatttttacaagtttgtcgcttgcaaacttgtttc-tttcaacctaggtttagcgcttgctagcctatgcttct 31913454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 43681433 - 43681529
Alignment:
Q  136 agttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttttt-aatctaggtttagcgtttgctag 231  Q
    |||||| | |||||||||| ||||  ||| ||  |||||||||  |||||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  43681433 agttttcttaatttctggtagattctggatctctattttcacaaatttgtcgcttgcaaacttgtttttttttcaatctaggtttagcgcttgctag 43681529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 33152841 - 33152756
Alignment:
Q  133 tagagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 216  Q
    ||||||||||||  ||||||||||||||| ||||||   ||| ||  | |||||||||||||||||||||||||||| ||||||||    
T  33152841 tagagttttttcttaatttctggtggattccggaaccctattgtcgtaagtttgtcgcttgcaaacttgtttcttttcaatctagg 33152756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 8221458 - 8221546
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 222  Q
    |||||||| ||||||||||||||||| | ||||   ||||||| | |||||||| |||||||||||| ||| || ||||| ||||||||    
T  8221458 agagttttctcaatttctggtggattccagaaccctattttcataagtttgtcgtttgcaaacttgtctctattcaatcttggtttagc 8221546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 8931226 - 8931285
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||| |||||||||||||||||| |||| ||||||||||||||| ||||||    
T  8931226 attttcacaagtttatcgcttgcaaacttgttt-ttttcaatctaggtttagcgcttgcta 8931285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 9195061 - 9194970
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgttt 226  Q
    |||||||||||||||| ||||||||||  ||||   |||  |||| ||||||||||||||||||||||||  || |||||||||||| |||||    
T  9195061 agagttttttcaatttttggtggattattgaaccctattaacacatgtttgtcgcttgcaaacttgtttc-attcaatctaggtttaacgttt 9194970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 10925710 - 10925814
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagtc 233  Q
    ||||||||||||||||  |||||||| | ||||   ||||| ||| |||||||||||||||| ||||   |||| ||| ||||||||||| ||||||| |    
T  10925710 agagttttttcaattttcggtggattccagaaccatatttttacaagtttgtcgcttgcaaaattgt---ttttcaatttaggtttagcgcttgctagcc 10925806  T
Q  234 tctgcttc 241  Q
    || |||||    
T  10925807 tccgcttc 10925814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 28661151 - 28661090
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||| |||||||| ||||||||||||||||||||| | ||| ||||||||||  |||||||    
T  28661151 atttttacaggtttttcgcttgcaaacttgtttcttatcaatttaggtttagcacttgctag 28661090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 13444071 - 13444021
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttag 221  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||    
T  13444071 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttag 13444021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 28659686 - 28659587
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt--ttaatctaggtttagcgtttgctag 231  Q
    |||||||||| ||||||| ||||||  |||||    ||||||||| |||| || ||||||||||||||| |||  | ||| |||||||||| ||||||||    
T  28659686 agagtttttttaatttctagtggatatcggaatccaattttcacaagtttatcccttgcaaacttgttttttttatcaatataggtttagcatttgctag 28659587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 50857527 - 50857468
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| ||||||||||| |||||||  |||||||  |||||||||||||| ||||||    
T  50857527 attttcacaagtttgtcgcttacaaactt-attcttttctatctaggtttagcgcttgcta 50857468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 24731197 - 24731294
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| |||||||||| || ||| || ||||  ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||| |||||||    
T  24731197 agagttttctcaatttctgatgaattccgaaactctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagcgcttgctag 24731294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 25479524 - 25479427
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttct-ttttaatctaggtttagcgtttgcta 230  Q
    |||||||| |||| |||||||||||| |||||| | ||||||| || |||||| ||||||| ||||||||| |||||| |||||||||||||||||||    
T  25479524 agagttttctcaaattctggtggattccggaaccttattttcaaagatttgtcacttgcaaccttgtttcttttttaacctaggtttagcgtttgcta 25479427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 20693769 - 20693855
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    |||||||| |||||||||| |||||| ||||||   |||||||||  |||||||||||||||||||||| |||| ||||||||||||    
T  20693769 agagttttctcaatttctgatggattccggaaccatattttcacaaatttgtcgcttgcaaacttgtttattttcaatctaggttta 20693855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 14130135 - 14130221
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggttta 220  Q
    |||||||| ||||||||||||||||| |||||| | |||||||||  ||| |||||||||||||||| ||||||  |||||| ||||    
T  14130135 agagttttctcaatttctggtggattccggaaccttattttcacaaatttatcgcttgcaaacttgtctcttttcgatctagattta 14130221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 16598218 - 16598315
Alignment:
Q  134 agagttttttcaattt-ctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    |||||||| ||||||| |||||| |||  |||||   ||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||| ||||||    
T  16598218 agagttttctcaatttactggtgtattttggaaccctattttcacaagtttgtcgcgtgcaaacttgtttctttctaatctaagtttagcgcttgcta 16598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 2687712 - 2687812
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctagtc 233  Q
    |||||||| ||||||||| |||||||   ||||   ||||||||| ||||||||||||||||||||||  ||||  |||||||||||||| | |||||||    
T  2687712 agagttttctcaatttcttgtggattctagaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggtttagcgctcgctagtc 2687811  T
Q  234 t 234  Q
    |    
T  2687812 t 2687812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 2689117 - 2689195
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatct 213  Q
    |||||||| |||||||||| |||||  ||||||   |||||||||| ||||||||||||||||||||||||||| |||||    
T  2689117 agagttttctcaatttctg-tggatgccggaaccctattttcacagttttgtcgcttgcaaacttgtttcttttcaatct 2689195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 18468628 - 18468714
Alignment:
Q  143 tcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||||||||||| ||||||   ||||||||| ||||||||||||||| |||| |||||||  | |||||||||||| ||||||    
T  18468628 tcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaagcttg-ttcttttctacctaggtttagcgcttgcta 18468714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 2189844 - 2189744
Alignment:
Q  132 ttagagttttttc--aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 229  Q
    |||||||||||||  | ||| ||||||||| |  ||| | ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||    
T  2189844 ttagagttttttctcattttttggtggattccaaaaccttattttcacaagtttgtcgcttgcaaacttg-ttcttttcaatcgaggtttagcgcttgct 2189746  T
Q  230 ag 231  Q
    ||    
T  2189745 ag 2189744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 24577647 - 24577554
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttg 227  Q
    |||||||| |||||||||||||||||||| |||   ||||||||| |||||||  |||||||||||| ||| || ||| || ||||| ||||||    
T  24577647 agagttttctcaatttctggtggattacgaaaccccattttcacatgtttgtcatttgcaaacttgtctctcttcaatataagtttatcgtttg 24577554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 24578896 - 24578807
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    ||||||||  |||||||| ||||||| | ||||   |||||||||| |||  ||||||||||||||||||||||  ||||||||||||||    
T  24578896 agagttttcacaatttctagtggattccagaaccctattttcacagatttaccgcttgcaaacttgtttcttttcgatctaggtttagcg 24578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 42890398 - 42890458
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| |||||||    
T  42890398 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgctag 42890458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 42891747 - 42891687
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| |||||||    
T  42891747 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgctag 42891687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 23570590 - 23570649
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  23570590 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 23570649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 22926731 - 22926679
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  22926731 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 22926679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 24731038 - 24731099
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||||| |||||| ||||||||||||||| ||||| ||||||  ||||||| |||||||    
T  24731038 attttcacaagtttgttgcttgcaaacttgttccttttcaatctaaatttagcgcttgctag 24731099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 26374870 - 26374966
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| | ||||||||||||||| || |||   ||||| ||| ||||||||||||| |||||| ||||||| |||||||| ||| || |||||||    
T  26374870 agagttttcttaatttctggtggatttcgaaaccctatttttacaagtttgtcgcttgcgaacttg-ttcttttcaatctaggcttaacgcttgctag 26374966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 22512129 - 22512070
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  | |||||||||||| ||||||    
T  22512129 attttcacaagtttgtcgcttgcaaacttg-ttcttttctacctaggtttagcgcttgcta 22512070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 22519429 - 22519370
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  | |||||||||||| ||||||    
T  22519429 attttcacaagtttgtcgcttgcaaacttg-ttcttttctacctaggtttagcgcttgcta 22519370  T

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Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 22921933 - 22921874
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||  |||||||  |||||||||||||| ||||||    
T  22921933 attttcacaagtttgtcgcttgcaaactt-attcttttctatctaggtttagcgcttgcta 22921874  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 6845342 - 6845401
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||| ||||||| ||||||||| |||||  |||||||||||||| ||||||    
T  6845342 attttcacaagtttatcgcttgtaaacttgtt-cttttctatctaggtttagcgcttgcta 6845401  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 2472803 - 2472711
Alignment:
Q  138 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||| ||||||||||||||||| ||||||   ||||||||| |||||||| |||||||||||| || ||| ||| ||||||||||| |||||||    
T  2472803 ttttctcaatttctggtggattccggaaccctattttcacaagtttgtcggttgcaaacttgtctc-tttcaatttaggtttagcgcttgctag 2472711  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 43304043 - 43303984
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||||||| ||||||    
T  43304043 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 43303984  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 5128915 - 5128967
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    ||||||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  5128915 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 5128967  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 2107972 - 2107901
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttcttt 206  Q
    |||||||| ||||| ||||||||||| |||||| | ||||| ||| |||||| |||||||||| |||||||||    
T  2107972 agagttttctcaatctctggtggatt-cggaaccttatttttacaagtttgttgcttgcaaacctgtttcttt 2107901  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 43306755 - 43306696
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||| ||||||||||||| |||||||  |||||||||||||| ||||||    
T  43306755 attttcacaagtttgttgcttgcaaacttg-ttcttttctatctaggtttagcgcttgcta 43306696  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 45168401 - 45168351
Alignment:
Q  171 ttttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagc 222  Q
    |||||||| |||||||||||||||||||||||  ||| ||||||||||||||    
T  45168401 ttttcacaagtttgtcgcttgcaaacttgttt-atttcaatctaggtttagc 45168351  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 33175841 - 33175902
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||||| | |||||||  |||||||||||| |||||| ||| |||||||| ||||||||||    
T  33175841 attttcataagtttgtcctttgcaaacttgtctcttttcaatataggtttatcgtttgctag 33175902  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 3063820 - 3063761
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| ||||||||||||||||| | ||||||||  ||||||||||| || ||||||    
T  3063820 attttcacaagtttgtcgcttgcaaac-tctttcttttctatctaggtttaacgcttgcta 3063761  T

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Target: scaffold0110 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 46844 - 46758
Alignment:
Q  143 tcaatttctggtggattacggaac-ttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgct 229  Q
    ||||||| ||||||||| |||||| || ||||| | |||||||||||||||||||||| |||||||  |||||||||||||| |||||    
T  46844 tcaatttttggtggattccggaaccttaattttgataggtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcgcttgct 46758  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 18252386 - 18252453
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtt 201  Q
    |||||||| ||||||||| ||||||||  ||||   ||||||||||||||||||||||||||||||||    
T  18252386 agagttttctcaatttctagtggattatagaaccctattttcacaggtttgtcgcttgcaaacttgtt 18252453  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 492576 - 492634
Alignment:
Q  173 ttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||| |||||||||||||||||||||||||||| ||||||  ||||||| |||||||    
T  492576 ttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaaatttagcgcttgctag 492634  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 8456483 - 8456402
Alignment:
Q  149 tctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||||| |||||    ||||| ||| ||| ||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  8456483 tctggtggatttcggaatcctatttttacaagttcgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgcta 8456402  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 26140313 - 26140409
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    |||||||| ||||||| |||||||||   ||||   ||||||| | ||||||||||||||| |||||||  ||| ||||||| ||||||||||||||    
T  26140313 agagttttctcaatttttggtggattcttgaaccctattttcataagtttgtcgcttgcaatcttgttttctttcaatctagatttagcgtttgcta 26140409  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 19497419 - 19497327
Alignment:
Q  138 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    |||| ||||||| || |||||| ||||||   ||||||||| ||||||||||||||||||||||  |||||  ||||  ||||||| ||||||    
T  19497419 ttttctcaatttttgatggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgttctttttttttctacatttagcgcttgcta 19497327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 21849048 - 21848989
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||||| ||| ||||||    
T  21849048 attttcacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttggcgcttgcta 21848989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 40778869 - 40778817
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    ||||| ||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  40778869 atttttacaagtttgtcgcttgcaaacttg-ttcttttctatctaggtttagcg 40778817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 9868488 - 9868428
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgcta 230  Q
    ||||||||| |||||| ||||| ||||||||||||||| ||| ||| |||| | |||||||    
T  9868488 attttcacaagtttgttgcttgtaaacttgtttcttttcaatatagatttaacatttgcta 9868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 9672 - 9770
Alignment:
Q  134 agagttttttcaatttctggtggattacggaacttgattttcaca--ggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||| ||||||||||||||||| ||||||   |||||||||   ||| |||||||| ||||||| ||||||| |||||||||||| || |||||||    
T  9672 agagttttctcaatttctggtggatttcggaaccctattttcacaagtgttagtcgcttggaaacttg-ttcttttcaatctaggtttaccgcttgctag 9770  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 37693 - 37769
Alignment:
Q  145 aatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcg 223  Q
    |||||||||| ||||  ||||| | ||||||| | |||||||||||||||||||| ||||||| |||||||||||||||    
T  37693 aatttctggtcgattttggaacct-attttcataagtttgtcgcttgcaaacttg-ttcttttcaatctaggtttagcg 37769  T

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Target: scaffold0240 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 1632 - 1724
Alignment:
Q  138 ttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||| |||| |||||||||||| | ||||   ||||| ||| |||||||| ||||||||||||||| ||| |||||||||||| || |||||||    
T  1632 ttttctcaaattctggtggattccagaaccatattttgacaagtttgtcgtttgcaaacttgtttc-tttcaatctaggtttaacgcttgctag 1724  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 145752 - 145801
Alignment:
Q  182 ttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    |||||||||||||||||| || |||| ||||||||||||||| |||||||    
T  145752 ttgtcgcttgcaaacttgatttttttcaatctaggtttagcgattgctag 145801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 11671 - 11626
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctagg 216  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  11671 attttcacaagtttgtcacttgcaaactt-tttctttttaatctagg 11626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 17646 - 17706
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgtttgctag 231  Q
    ||||| ||| |||||||| ||||||||||||||| ||| |||||||||||| || |||||||    
T  17646 attttgacaagtttgtcgtttgcaaacttgtttc-tttcaatctaggtttaacgcttgctag 17706  T

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Target: scaffold0236 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 16404 - 16459
Alignment:
Q  170 attttcacaggtttgtcgcttgcaaacttgtttctttttaatctaggtttagcgttt 226  Q
    |||||| || ||||||||||||||||||  ||| |||||||||||||||||| ||||    
T  16404 attttctcaagtttgtcgcttgcaaactcattt-tttttaatctaggtttagtgttt 16459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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