View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_low_24 (Length: 244)

Name: NF11471_low_24
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_low_24
NF11471_low_24
[»] chr7 (7 HSPs)
chr7 (51-244)||(41852384-41852581)
chr7 (171-244)||(26633268-26633341)
chr7 (194-233)||(12251485-12251524)
chr7 (196-231)||(26282641-26282676)
chr7 (170-244)||(32956678-32956753)
chr7 (196-244)||(1365939-1365987)
chr7 (194-233)||(36796469-36796509)
[»] chr8 (7 HSPs)
chr8 (170-234)||(5869416-5869480)
chr8 (170-233)||(32098275-32098338)
chr8 (181-233)||(3445596-3445648)
chr8 (196-244)||(34524037-34524085)
chr8 (196-231)||(12531489-12531524)
chr8 (196-231)||(39698037-39698072)
chr8 (181-234)||(35874839-35874892)
[»] chr6 (5 HSPs)
chr6 (170-233)||(11088460-11088523)
chr6 (194-229)||(2618283-2618318)
chr6 (191-244)||(19231538-19231591)
chr6 (189-233)||(12614813-12614857)
chr6 (194-233)||(24455146-24455186)
[»] chr3 (6 HSPs)
chr3 (182-233)||(23164669-23164720)
chr3 (194-229)||(18408119-18408154)
chr3 (194-233)||(21784881-21784920)
chr3 (182-233)||(54430468-54430519)
chr3 (196-233)||(6715379-6715416)
chr3 (196-229)||(48627130-48627163)
[»] chr4 (4 HSPs)
chr4 (170-234)||(21791643-21791707)
chr4 (170-233)||(26329127-26329190)
chr4 (196-230)||(45172744-45172778)
chr4 (181-234)||(24449039-24449092)
[»] chr1 (9 HSPs)
chr1 (170-234)||(15441194-15441258)
chr1 (182-233)||(14084798-14084849)
chr1 (170-229)||(27703630-27703689)
chr1 (181-234)||(1269474-1269527)
chr1 (171-244)||(5560388-5560461)
chr1 (196-244)||(12971336-12971384)
chr1 (182-233)||(28189313-28189364)
chr1 (170-223)||(3907376-3907429)
chr1 (170-229)||(6333616-6333676)
[»] chr5 (7 HSPs)
chr5 (196-244)||(3349814-3349862)
chr5 (170-234)||(27351253-27351317)
chr5 (196-244)||(43511548-43511596)
chr5 (196-231)||(10591372-10591407)
chr5 (194-233)||(13656135-13656174)
chr5 (196-244)||(4734668-4734716)
chr5 (196-244)||(42291967-42292015)
[»] chr2 (4 HSPs)
chr2 (194-233)||(42411655-42411694)
chr2 (171-233)||(1418816-1418877)
chr2 (196-244)||(17117723-17117771)
chr2 (194-233)||(25222250-25222290)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 244
Target Start/End: Complemental strand, 41852581 - 41852384
Alignment:
Q  51 aaaaagtatagtttactaaaaggaaaataattcttagacattaaaaagaggtccaaccg----tgggagtgtaagctgctcaatcaaatcgggtcttcaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||| ||||||    
T  41852581 aaaaagtatagtttactaaaaggaaaataattcttagacattaaaaagaggtccagccggccttgggagtgtaagctgctcaatcaaatcgggccttcaa 41852482  T
Q  147 aagttacgggcttnnnnnnnnnntatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||||| |          |||||||||||||||||||| || | ||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  41852481 aagttacgggcctaaaaaaaatatatgttacttatttttctctctttaatacacgtttgggttttttctagactttagttctcctttcaggatgtaaa 41852384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 26633268 - 26633341
Alignment:
Q  171 atgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||| ||||||| | ||| |||||||| ||| ||||||||||||| ||||||| ||||| |||| ||||    
T  26633268 atgttacttctttttctttcttcggtacacgtatgagttttttctagactctagttctactttctggacataaa 26633341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 12251524 - 12251485
Alignment:
Q  194 agtacacgtttgaattttttctagactttagttctccttt 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  12251524 agtacacgtttgagttttttctagactctagttctccttt 12251485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 26282676 - 26282641
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcct 231  Q
    ||||||||||| ||||||||||||||||||||||||    
T  26282676 tacacgtttgagttttttctagactttagttctcct 26282641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 32956678 - 32956753
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttga-attttttctagactttagttctcctttcaggacgtaaa 244  Q
    |||||||||| ||||||| | ||| ||||||||||||  |||||| |||||| ||||||||||||| |||| ||||    
T  32956678 tatgttacttctttttctttcttcggtacacgtttgagtttttttttagactctagttctcctttctggacataaa 32956753  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 1365939 - 1365987
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||||| ||| |||||||||||||||||||| || |||| ||||    
T  1365939 tacacgtttgagtttcttctagactttagttctcctatctggacataaa 1365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 36796509 - 36796469
Alignment:
Q  194 agtacacgtttgaattttttctagactt-tagttctccttt 233  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  36796509 agtacacgtttgagttttttctagacttctagttctccttt 36796469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 5869480 - 5869416
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctcctttc 234  Q
    |||||||||||||||||| | ||||||||||| |||| |||||| ||||||||||||||||||||    
T  5869480 tatgttacttatttttctttattcagtacacgattgagttttttttagactttagttctcctttc 5869416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 32098338 - 32098275
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    |||||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||| ||||||    
T  32098338 tatgttacttctttttctttcttcagtacacgtttgagttttttctagactctagttatccttt 32098275  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 3445596 - 3445648
Alignment:
Q  181 tttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    ||||||| | || |||||||||||||||||||| |||||| ||||||||||||    
T  3445596 tttttctttctttagtacacgtttgaattttttttagactctagttctccttt 3445648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 34524085 - 34524037
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||||| |||||||||||||||||||||||| || |||| ||||    
T  34524085 tacacgtttgagttttttctagactttagttctcctatctggacataaa 34524037  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 12531489 - 12531524
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcct 231  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12531489 tacacgtttgagttttttctagactttagttctcct 12531524  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 39698072 - 39698037
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcct 231  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39698072 tacacgtttgagttttttctagactttagttctcct 39698037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 35874839 - 35874892
Alignment:
Q  181 tttttctcttttcagtacacgtttgaattttttctagactttagttctcctttc 234  Q
    ||||||| | |||||||||||| ||| ||||||||||||| ||||||| |||||    
T  35874839 tttttctttcttcagtacacgtatgagttttttctagactctagttctactttc 35874892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 11088460 - 11088523
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    |||||||||| ||||||| ||||| |||||||||||| ||||||||||||| || |||||||||    
T  11088460 tatgttacttctttttcttttttcggtacacgtttgagttttttctagactctaattctccttt 11088523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 2618283 - 2618318
Alignment:
Q  194 agtacacgtttgaattttttctagactttagttctc 229  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2618283 agtacacgtttgagttttttctagactttagttctc 2618318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 19231538 - 19231591
Alignment:
Q  191 ttcagtacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||| |||||||||| ||||||||||| ||||||||| ||||| |||| ||||    
T  19231538 ttcaggacacgtttgagttttttctagagtttagttctactttctggacataaa 19231591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 12614857 - 12614813
Alignment:
Q  189 ttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    |||| ||||||||||||| |||||| |||||| ||||||||||||    
T  12614857 tttttagtacacgtttgagttttttttagactctagttctccttt 12614813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 24455146 - 24455186
Alignment:
Q  194 agtacacgtttgaatttt-ttctagactttagttctccttt 233  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  24455146 agtacacgtttgaatttttttctagactctagttctccttt 24455186  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 23164720 - 23164669
Alignment:
Q  182 ttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  23164720 ttttcttttttcagtacacgtttgagttttttctagactctagttctccttt 23164669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 18408119 - 18408154
Alignment:
Q  194 agtacacgtttgaattttttctagactttagttctc 229  Q
    ||||||||||||| ||||||||||||||||||||||    
T  18408119 agtacacgtttgagttttttctagactttagttctc 18408154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 21784920 - 21784881
Alignment:
Q  194 agtacacgtttgaattttttctagactttagttctccttt 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  21784920 agtacacgtttgagttttttctagactctagttctccttt 21784881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 54430468 - 54430519
Alignment:
Q  182 ttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    |||||| ||||| |||||||||||| |||||||||| || ||||||||||||    
T  54430468 ttttcttttttcggtacacgtttgagttttttctaggctctagttctccttt 54430519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 6715379 - 6715416
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctccttt 233  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  6715379 tacacgtttgatttttttctagactctagttctccttt 6715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 48627163 - 48627130
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctc 229  Q
    ||||||||||| ||||||||||||||||||||||    
T  48627163 tacacgtttgagttttttctagactttagttctc 48627130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 21791707 - 21791643
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctcctttc 234  Q
    |||||||||| ||||||| |  |||||||| |||||| ||||||||||||| |||||||||||||    
T  21791707 tatgttacttctttttctttcatcagtacatgtttgagttttttctagactctagttctcctttc 21791643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 26329190 - 26329127
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    |||||||||| ||||||| | ||  |||||||||||||||||||||||||| || |||||||||    
T  26329190 tatgttacttctttttctttctttggtacacgtttgaattttttctagactgtaattctccttt 26329127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 45172778 - 45172744
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcc 230  Q
    ||||||||||| |||||||||||||||||||||||    
T  45172778 tacacgtttgagttttttctagactttagttctcc 45172744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 24449039 - 24449092
Alignment:
Q  181 tttttctcttttcagtacacgtttgaattttttctagactttagttctcctttc 234  Q
    ||||||| | |||||||||||| ||| ||||||||||||| ||||||| |||||    
T  24449039 tttttctttcttcagtacacgtatgagttttttctagactctagttctactttc 24449092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 15441194 - 15441258
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctcctttc 234  Q
    |||||||||| ||||||| | |||  ||||||||||| ||||||||||||| |||||||||||||    
T  15441194 tatgttacttctttttctttcttcgatacacgtttgagttttttctagactctagttctcctttc 15441258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 14084849 - 14084798
Alignment:
Q  182 ttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    |||||| | ||||||||| |||||||||||||||||||| ||||||||||||    
T  14084849 ttttctttcttcagtacaggtttgaattttttctagactctagttctccttt 14084798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 27703689 - 27703630
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctc 229  Q
    |||||||||| ||||||| | || ||||||||||||| ||||||||||||| ||||||||    
T  27703689 tatgttacttctttttctttctttagtacacgtttgagttttttctagactctagttctc 27703630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 1269474 - 1269527
Alignment:
Q  181 tttttctcttttcagtacacgtttgaattttttctagactttagttctcctttc 234  Q
    ||||||| ||||| |||||||||||| ||||||||||||| || ||||||||||    
T  1269474 tttttcttttttctgtacacgtttgagttttttctagactctaattctcctttc 1269527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 5560388 - 5560461
Alignment:
Q  171 atgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||| ||||||| | ||||||||||||||||  ||||| |||||| |||||||| |||| |||| ||||    
T  5560388 atgttacttttttttctttcttcagtacacgtttgagatttttttagactatagttctcatttctggacataaa 5560461  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 12971336 - 12971384
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||||| |||||||||||||||||||||||| || |||| ||||    
T  12971336 tacacgtttgagttttttctagactttagttctcctatctggacataaa 12971384  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 28189313 - 28189364
Alignment:
Q  182 ttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    |||||| | |||| ||||||||||| |||||| |||||||||||||||||||    
T  28189313 ttttctttcttcaatacacgtttgagttttttttagactttagttctccttt 28189364  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 3907376 - 3907429
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagacttta 223  Q
    |||||||||| ||||||| |||| ||||||||||| | |||||| |||||||||    
T  3907376 tatgttacttctttttctttttttagtacacgtttaagttttttttagacttta 3907429  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 6333676 - 6333616
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttt-tctagactttagttctc 229  Q
    |||||||||||||||||| | ||| |||||||||||| ||||| | |||||| ||||||||    
T  6333676 tatgttacttatttttctttcttcggtacacgtttgagtttttctttagactctagttctc 6333616  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 3349862 - 3349814
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||||| |||||||||||||||||||||||| || |||| ||||    
T  3349862 tacacgtttgagttttttctagactttagttctcctatctggacataaa 3349814  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 27351253 - 27351317
Alignment:
Q  170 tatgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctcctttc 234  Q
    ||||||||||  |||||| | ||||||| ||||||||  |||||||||||| |||||||||||||    
T  27351253 tatgttacttccttttctttcttcagtatacgtttgagatttttctagactctagttctcctttc 27351317  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 43511548 - 43511596
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||||| |||||||||||||||||||||||| || |||| ||||    
T  43511548 tacacgtttgagttttttctagactttagttctcctatctggacataaa 43511596  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 10591407 - 10591372
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcct 231  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10591407 tacacgtttgagttttttctagactttagttctcct 10591372  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 13656135 - 13656174
Alignment:
Q  194 agtacacgtttgaattttttctagactttagttctccttt 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  13656135 agtacacgtttgagttttttctagactctagttctccttt 13656174  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 4734716 - 4734668
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    |||| |||||| |||||||||||||||||||||||| || |||| ||||    
T  4734716 tacatgtttgagttttttctagactttagttctcctatctggacataaa 4734668  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 42292015 - 42291967
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||||| ||||||||| |||||||||||||| || |||| ||||    
T  42292015 tacacgtttgacttttttctaaactttagttctcctatctggacataaa 42291967  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 42411694 - 42411655
Alignment:
Q  194 agtacacgtttgaattttttctagactttagttctccttt 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  42411694 agtacacgtttgagttttttctagactctagttctccttt 42411655  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 1418816 - 1418877
Alignment:
Q  171 atgttacttatttttctcttttcagtacacgtttgaattttttctagactttagttctccttt 233  Q
    ||||||||| ||||||| | |||||||||||| ||| ||||||||||||| ||||||| ||||    
T  1418816 atgttacttttttttct-tcttcagtacacgtatgagttttttctagactctagttctacttt 1418877  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 17117771 - 17117723
Alignment:
Q  196 tacacgtttgaattttttctagactttagttctcctttcaggacgtaaa 244  Q
    ||||||||||||||||||||||| ||||| |||||| || |||| ||||    
T  17117771 tacacgtttgaattttttctagattttagctctcctatctggacataaa 17117723  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 25222250 - 25222290
Alignment:
Q  194 agtacacgtttgaatttt-ttctagactttagttctccttt 233  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  25222250 agtacacgtttgagtttttttctagactttagttctccttt 25222290  T

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