View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_28 (Length: 237)
Name: NF11471_low_28
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28925111 - 28925332
Alignment:
| Q |
1 |
tgcatataagaaaagtatgatagcaaataaaaggtccctcatgttaacttccttctgcagcagtgtatgacttagtcgtgtgcaatattcttttgtacca |
100 |
Q |
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| T |
28925111 |
tgcatataagaaaagtatgatagcaaataaaaggtcactcatgttgacttccttctgcagcaatgtatgacttagtcgtgtgcaatattcttttgtacca |
28925210 |
T |
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| Q |
101 |
attaaagcaaattgctatcaaaattacaagtatgatcctcttctacttaaaagaatacatttaatcatgaagcaaaaacaagattttagaaataagacca |
200 |
Q |
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| T |
28925211 |
attaaagcaaattgctatcaaaattacatgtatgatcctcttctacttaaaataatacatttaatcatgaagcaaaaacaagattttagaaataagacca |
28925310 |
T |
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| Q |
201 |
agaaaaatgagaatatgatagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
28925311 |
agaaaaatgagaatatgatagt |
28925332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 28901486 - 28901697
Alignment:
| Q |
4 |
atataagaaaagtatgatagcaaataaaaggtccctcatgttaacttccttctgcagcagtgtatgacttagtcgtgtgcaatattcttttgtaccaatt |
103 |
Q |
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| T |
28901486 |
atataagaaaattatgattgggaaaaaaaggtcactcatgttgacctcgttctgcagcaatgtatgacttcgtcatgtgcaatattcttttctaccaatt |
28901585 |
T |
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| Q |
104 |
aaagcaaattgctatcaaaattacaagtatgatcctcttctacttaaaagaatacatttaatcatgaagcaaaaacaagattttagaaataagaccaaga |
203 |
Q |
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| T |
28901586 |
aaagcaaattgctatcaaaatgtcatatatgatcctcttatacataaaagaatatacgaaatcatgaagcaaaaacaagattttagaaatgagaccaaga |
28901685 |
T |
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| Q |
204 |
aaaatgagaata |
215 |
Q |
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|||||||||||| |
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| T |
28901686 |
aaaatgagaata |
28901697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 28916042 - 28916119
Alignment:
| Q |
64 |
tgtatgacttagtcgtgtgcaatattcttttgtaccaattaaagcaaattgctatcaaaattacaagtatgatcctctt |
142 |
Q |
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| T |
28916042 |
tgtacgacttagtcatgtgcaatattattttctacaaattaaagcaaattgc-atcaaaattacatgtatgatcctctt |
28916119 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 28891158 - 28891253
Alignment:
| Q |
82 |
gcaatattcttttg-taccaattaaagcaaattgctatcaaaattacaagtatgatcctcttctacttaaaagaatacatttaatcatgaagcaaa |
176 |
Q |
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| T |
28891158 |
gcaatattctttttctaccaattaaagcaaatagctgtcaaaattacacgtatgaaccacgtctacgtaaaagaatatataaaatcatgaagcaaa |
28891253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28915919 - 28916014
Alignment:
| Q |
1 |
tgcatataagaaaagtatgatagcaaataaaag---gtccctcatgttaacttccttctgcagcagtgtatgacttagtcgtgtgcaatattcttt |
93 |
Q |
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||||||||||||| |||||||||| | |||||| ||| |||||||| | ||||||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
28915919 |
tgcatataagaaaggtatgatagctagtaaaagaaggtcactcatgttgaattccttctgtggcaatgtatgacttagttatgtgcaatattcttt |
28916014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 28934283 - 28934359
Alignment:
| Q |
101 |
attaaagcaaattgctatcaaaattacaagtatgatcctcttctacttaaaagaatacatttaatcatgaagcaaaa |
177 |
Q |
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||||||||| ||| | ||||||||||| || |||||| |||||||||||||||||| | ||||||||||||||| |
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| T |
28934283 |
attaaagcagatttttgtcaaaattacacgtttgatccacttctacttaaaagaatatacaaaatcatgaagcaaaa |
28934359 |
T |
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