View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_low_29 (Length: 236)

Name: NF11471_low_29
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_low_29
NF11471_low_29
[»] chr8 (7 HSPs)
chr8 (1-217)||(31909235-31909451)
chr8 (2-48)||(3479030-3479076)
chr8 (1-47)||(3785926-3785972)
chr8 (7-47)||(19472624-19472664)
chr8 (7-47)||(19543549-19543589)
chr8 (7-47)||(19589107-19589147)
chr8 (113-202)||(30919424-30919513)
[»] chr7 (4 HSPs)
chr7 (1-47)||(2576966-2577012)
chr7 (6-48)||(18446569-18446611)
chr7 (1-47)||(26389160-26389206)
chr7 (2-47)||(1773696-1773741)
[»] chr6 (1 HSPs)
chr6 (1-46)||(21146958-21147003)
[»] chr5 (1 HSPs)
chr5 (1-48)||(18587507-18587554)
[»] chr1 (2 HSPs)
chr1 (1-40)||(16385556-16385595)
chr1 (1-47)||(12685086-12685132)
[»] scaffold0016 (1 HSPs)
scaffold0016 (7-47)||(48375-48415)
[»] chr3 (1 HSPs)
chr3 (50-86)||(2202937-2202973)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 31909235 - 31909451
Alignment:
Q  1 gtaccctaacttactctaaaatgagtattactatctatatttcaacatgattcattaaaatgaatcaggatttatcacagtgaatctgatccatcataat 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  31909235 gtaccttaacttactctaaaatgagtattactatctatatttcaacatgattcattagaatgaatcatgatttatcacagtgaatctgatccatcataat 31909334  T
Q  101 ggatcgggttttaagatgatattgatgtctaaaatagctacacaccaaagattcacatcaattgagttcagttctgtatcgaaccaagatacaacttgca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31909335 ggatcgggttttaagatgatattgatgtctaaaatagctacacaccaaagattcacatcaattgagttcagttctgtatcgaaccaagatacgacttgca 31909434  T
Q  201 tgaatgtttagttattg 217  Q
    |||||||||||||||||    
T  31909435 tgaatgtttagttattg 31909451  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 3479076 - 3479030
Alignment:
Q  2 taccctaacttactctaaaatgagtattactatctatatttcaacat 48  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||    
T  3479076 taccctaactaactctaaaatgagtataactatctatatttcaacat 3479030  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3785926 - 3785972
Alignment:
Q  1 gtaccctaacttactctaaaatgagtattactatctatatttcaaca 47  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  3785926 gtaccctaactaactctaaaatgagtatcactatctatatttcaaca 3785972  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 19472624 - 19472664
Alignment:
Q  7 taacttactctaaaatgagtattactatctatatttcaaca 47  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  19472624 taactaactctaaaatgagtattactatctatatttcaaca 19472664  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 19543549 - 19543589
Alignment:
Q  7 taacttactctaaaatgagtattactatctatatttcaaca 47  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  19543549 taactaactctaaaatgagtattactatctatatttcaaca 19543589  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 19589147 - 19589107
Alignment:
Q  7 taacttactctaaaatgagtattactatctatatttcaaca 47  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  19589147 taactaactctaaaatgagtattactatctatatttcaaca 19589107  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 30919424 - 30919513
Alignment:
Q  113 aagatgatattgatgtctaaaatagctacacaccaaagattcacatcaattgagttcagttctgtatcgaaccaagatacaacttgcatg 202  Q
    ||||||| ||| ||||| || |||| | ||||| ||||||||  ||  ||||||||||||| ||| ||||||| |||||||||| |||||    
T  30919424 aagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatg 30919513  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2577012 - 2576966
Alignment:
Q  1 gtaccctaacttactctaaaatgagtattactatctatatttcaaca 47  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  2577012 gtaccctaactaactctaaaatgagtatcactatctatatttcaaca 2576966  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 18446611 - 18446569
Alignment:
Q  6 ctaacttactctaaaatgagtattactatctatatttcaacat 48  Q
    |||||| |||||||||||||||| |||| ||||||||||||||    
T  18446611 ctaactaactctaaaatgagtataactaactatatttcaacat 18446569  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26389206 - 26389160
Alignment:
Q  1 gtaccctaacttactctaaaatgagtattactatctatatttcaaca 47  Q
    |||| |||||| |||||||||||||||| |||| |||||||||||||    
T  26389206 gtacactaactaactctaaaatgagtataactacctatatttcaaca 26389160  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 1773696 - 1773741
Alignment:
Q  2 taccctaacttactctaaaatgagtattactatctatatttcaaca 47  Q
    |||||||||| |||||||||||||||| |||| ||||| |||||||    
T  1773696 taccctaactaactctaaaatgagtataactacctataattcaaca 1773741  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21146958 - 21147003
Alignment:
Q  1 gtaccctaacttactctaaaatgagtattactatctatatttcaac 46  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  21146958 gtaccctaactaactttaaaatgagtataactatctatatttcaac 21147003  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18587507 - 18587554
Alignment:
Q  1 gtaccctaacttactctaaaatgagtattactatctatatttcaacat 48  Q
    ||||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  18587507 gtaccctaactaactctaaaataagtataactacctatatttcaacat 18587554  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16385595 - 16385556
Alignment:
Q  1 gtaccctaacttactctaaaatgagtattactatctatat 40  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  16385595 gtaccctaactaactctaaaatgagtataactatctatat 16385556  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12685132 - 12685086
Alignment:
Q  1 gtaccctaacttactctaaaatgagtattactatctatatttcaaca 47  Q
    |||| |||||| |||||||||||||||| |||| |||||||||||||    
T  12685132 gtacactaactaactctaaaatgagtataactaactatatttcaaca 12685086  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 48415 - 48375
Alignment:
Q  7 taacttactctaaaatgagtattactatctatatttcaaca 47  Q
    ||||| |||||||||||||||| |||| |||||||||||||    
T  48415 taactaactctaaaatgagtataactacctatatttcaaca 48375  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 2202973 - 2202937
Alignment:
Q  50 attcattaaaatgaatcaggatttatcacagtgaatc 86  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  2202973 attcattaaaatgaatcgggatttatcatagtgaatc 2202937  T

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