View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11471_low_3 (Length: 570)
Name: NF11471_low_3
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 20 - 560
Target Start/End: Complemental strand, 40673232 - 40672692
Alignment:
| Q |
20 |
agtcttgatagagaattcccaagtttccgagtcgagtcggcatcactcaaccaactaaccataaatggcaccgagaaaatgagtgcctcattgaacataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40673232 |
agtcttgatagagaattcccaagtttccgagtcgagtcggcatcactcaaccaactaaccataaatggcaccgagaaaatgagtgcctcattgaacataa |
40673133 |
T |
|
| Q |
120 |
cactctcagtctccgacccaaaccagtatctaagtgtctcataccaagaaacactcaatgctgatgtattttacagagatgaatatggcgatgtgactct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40673132 |
cactctcagtctccgacccaaaccagtatctaagtgtctcataccaagaaacactcaatgctgatgtattttacagagatgaatatggcgatgtgactct |
40673033 |
T |
|
| Q |
220 |
caagacatcaactcttcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatgagccacttcacttggccgagagcattgttcga |
319 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40673032 |
caagacatcaactattcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatgagccacttcacttggccgagagcattgttcgg |
40672933 |
T |
|
| Q |
320 |
aggcgccgtaaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacatttgaagt |
419 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40672932 |
aggcgccgtgaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacatttgaagt |
40672833 |
T |
|
| Q |
420 |
atgtttgctacccactaagctttggaatttcgaaaaatgtctacaattcaaccccagctgctctacttcaaggtgtaacatgcactaacacttagtatta |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40672832 |
atgtttgctacccactaagctttggaatttcgaaaaatgtctacaattcaaccccagctgctctacttcaaggtgtaacatgcactaacacttagtatta |
40672733 |
T |
|
| Q |
520 |
ttgatttacacttattagttactatattataggtatctgtg |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40672732 |
ttgatttacacttattagttactatattataggtatctgtg |
40672692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 92 - 466
Target Start/End: Complemental strand, 40683480 - 40683106
Alignment:
| Q |
92 |
gagaaaatgagtgcctcattgaacataacactctcagtctccgacccaaaccagtatctaagtgtctcataccaagaaacactcaatgctgatgtatttt |
191 |
Q |
| |
|
||||||||||| || ||| |||||| ||| ||||| | ||| ||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
40683480 |
gagaaaatgagcgctgcatggaacatcacagtctcattgtccaacccaaagcagtatctaagtgtctcataccaagatacactcgatgctgagatatttt |
40683381 |
T |
|
| Q |
192 |
acagagatgaatatggcg--at-gtgactctcaagacatcaactcttcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatga |
288 |
Q |
| |
|
||| ||||||||||||| || | ||||| || ||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||| ||| |
|
|
| T |
40683380 |
acatggatgaatatggcggcatcatcactctaaatacatcaactattcaacctttcaacggtagcatgattgagatgaagctgaaggtagactcgtgtga |
40683281 |
T |
|
| Q |
289 |
gccacttcacttggccgagagcattgttcgaaggcgccgtaaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttat |
388 |
Q |
| |
|
||| |||| || | | | |||| ||| || ||||| ||||||||||||||| |||||| |||||| |||||||||||||| ||| |||| || |
|
|
| T |
40683280 |
gcc---tcacgtgactaacaacatttatcgtagccgccgagaacatggaagggttgaattcggtctcaaattgttcacttccatccagtttaagaaagat |
40683184 |
T |
|
| Q |
389 |
atctttgtttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaat |
466 |
Q |
| |
|
||||||| ||||| ||| | ||||||| ||||||||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
40683183 |
atctttgaatccaactggataactttgaaggttgtttgctacccacttagctttgttatttcgcaaaatgtctacaat |
40683106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University